Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00548 ATGCCGCGTCCATTGTTTCTGTTTTTACTTTTATGTATATCGTGCTCAAGTGGTTTTTCTGAAACGGTGTCCCTTCCAAGAGAGTCTGAAATTCTACTTCGGGTTAAGAACACCCAGCTTGAAGACAAAAACAAGAGTCTACAAAATTGGGTACCAAACACAGACCACAACCCCTGCAACTGGACAGGCATTACCTGCGACGCACGAAACCAATCACTTGTCTCCATTGACCTCTCCGAAATTGGAATCTACGGCGAGTTCCCTTTCGGTTTTTGTCGCATTCAAACCCTCCAAAACCTTTCTCTCGCATTCAATTTTCTATCCAACTCTATCTCCCCCAGCTCTCTGCTCCTTTGTTCCCACCTCCGTCTCTTAAACCTCTCCGACAACTTCTTCGTCGGAAAACTGCCGGAATTCCCGCCGGAGTTTAGCGAACTAAGAGTATTAGACCTCTCGACGAACAACTTCACCGGCGACATTCCGGCTAGTTTTGGACAGATTCCAAGTCTGAGAGTGCTCATTTTATCCGGAAACCTTCTGAGCGGAACGATCCCTCCCTCTTTAGGCAACCTCAGTGAGTTAACTCGTTTGGAACTAGCTTATAATCCCTTCAAACAAGGCCCATTACCTCCACAACTAGGAAACCTCTCTAGTCTTGAAACACTATTCCTCGCCGGTGTTAACCTCGTAGGGGAAATTCCACCCTCCATTGGGAGCCTCACCTCGCTCAAGAACTTGGATTTATCCCAAAACTCTTTGTCAGGTAACATCCCAAACAGCATTTCAGGTCTGAAAAACGTTGAACAAATTGAACTATTTGATAACCAGCTTTCCGGTGAATTACCCCAAGGTTTTGGAAACCTCAGTAATTTAATTCTCTTGGACCTCTCTCAGAACGCTCTCACGGGAAAACTAACGCACGCAATCGCTTCTTTGCGTCTCTATTCTCTCAACCTGAATGACAACCTTCTCGAGGGAGAAATTCCTGAAAGTTTAGCTTCAAACCCCAACCTGCAGCAACTGAAACTCTTCAACAACAGCTTCACCGGGAAACTCCCACAAGATCTGGGACAAAAATCAGAGATACAGGAATTCGATGTCTCAACGAATGACTTCGTAGGAGAGTTGCCGAAGTACCTCTGCAAGAGAAACAAGCTGGAGCGTCTCATCACGTTCGCGAATCGCTTCTCAGGAACGCTCCCTGAGCAATACGGGGAATGTGGTTCACTTCAGTATGTCAGAATCCAGAACAACCAGTTATCAGGCCAGGTGCCGCCAATGTTTTGGGCCCTACCTGGTCTTCAGTTTCTGGAAATGTCCAACAACAGGTTCCAAGGTTCTGTATCTGCTTCCATCTCTACGGCACTCACCAAACTCATTTTGTCTGCTAACGCTTTTTCTGGTAAACTCCCAACGCGAATCTGCCAACTCCCTCACCTTCTGGAGATTGACGTCCGCAAGAACCGCTTCACCGGTGATGTTCCCACGTGCGTAACTGGGTTGACAAAATTACAGAAACTTAAGATGCAAGAGAACATGTTCACTGGTGAGATTCCCAATAACGTGGCCCTCTGGACTGACATGACAGAGTTGAACCTGTCGTTTAACCGATTCTCTGGTTCAATCCCGCGGGAACTTGGCGGTTTACAGGATTTGACATACCTTGATCTCGCCGTTAATTCTTTAACCGGGGAGATTCCGGTGGAGTTGACGAACCTAAGACTCAACCAGTTCAACGTCTCTGATAACAATCTACACGGGGAGGTTCCTTCAGGTTTCAACCACCAAGTATACTTGTCCGGTCTAATGGGAAACCCGGGTCTGTGCAGCGCCGTTATAAAAACCCTACCTTCTTGTTCGAAACGCAGGCCGTTTTCTCTGCTTGCGATTGTTGTTTTAGTTGCCTGCGGTTCGCTTCTTGTGGGGTCCATGTTGTGGTTCCTGAAGAGCAAAGCGCGCGGCAAATCCAAGCGCTCGTATTTGTCAACCGCGTTTCAGAGAGTGGGGTTCAATGAAGAAGACATTCTTTCGAACTTAACCCGGGAGAACGTGATTGGGGCAGGGAGTTCGGGTCGGGTCTATAGGGTGAGGCTGAAGACGGGACAGACGGTGGCGGTGAAGAAGCTGTTCAGCGGTGCGCAAAAGCCTGACACGGAATTGGTGTTCAGGGCGGAGATTGAGACGTTGGGTAGGATTCGACATGCGAATATTGTGAAACTGTTGTTTAGTTGCAGTGGTGATGAGTTTAGGGTGTTGGTGTATGAGTACATGGAGAATGGAAGCTTAGGGGATGTGTTGCATGGAGAAGACAGGTGTGGGGAGTTGATGGAGTGGTCTAGAAGGTTTGCAATTGCTGTGGGTGCGGCTCAGGGGTTGGCTTATTTGCACCATGATTGTGTGCCGGCAATTGTTCACAGGGACGTCAAGAGTAATAACATTTTGCTGGACCACGAGTTTTTGCCAAGAGTAGCAGACTTCGGCCTCGCTAAGACATTGCAGCGTGAGACCACCCAGGCTGCTGCCATGTCCAGGGTTGCTGGATCATATGGCTACATTGCTCCAGAGTATGCTTACACAATGAAAGTGACCGAGAAGAGTGATGTATATAGTTTTGGGGTTGTGCTGATGGAATTGATCACCGGGAAGAGGCCAAATGACTCTTCATTTGGTGAGAACAGGGATCTAGTGAAATGGATCACTGAGACTGTTTTATCACCATCTCCTGAAAGAGGAAGTGGCAATATGGGAGAAGGTAAAGATTATATTATGACCAAGATTGTGGACCCAAGGTTGAACCCAGTCACTTGTGATTATGATGAGGTTGAGAAGGTTTTGAATGTGGCCCTACTCTGCACCTCAGCATTTCCCATTAATAGACCCTCGATGAGAAGGGTTGTTGAATTGCTCAAGGACCATAAACTGCCATGA 2928 0.4751 MPRPLFLFLLLCISCSSGFSETVSLPRESEILLRVKNTQLEDKNKSLQNWVPNTDHNPCNWTGITCDARNQSLVSIDLSEIGIYGEFPFGFCRIQTLQNLSLAFNFLSNSISPSSLLLCSHLRLLNLSDNFFVGKLPEFPPEFSELRVLDLSTNNFTGDIPASFGQIPSLRVLILSGNLLSGTIPPSLGNLSELTRLELAYNPFKQGPLPPQLGNLSSLETLFLAGVNLVGEIPPSIGSLTSLKNLDLSQNSLSGNIPNSISGLKNVEQIELFDNQLSGELPQGFGNLSNLILLDLSQNALTGKLTHAIASLRLYSLNLNDNLLEGEIPESLASNPNLQQLKLFNNSFTGKLPQDLGQKSEIQEFDVSTNDFVGELPKYLCKRNKLERLITFANRFSGTLPEQYGECGSLQYVRIQNNQLSGQVPPMFWALPGLQFLEMSNNRFQGSVSASISTALTKLILSANAFSGKLPTRICQLPHLLEIDVRKNRFTGDVPTCVTGLTKLQKLKMQENMFTGEIPNNVALWTDMTELNLSFNRFSGSIPRELGGLQDLTYLDLAVNSLTGEIPVELTNLRLNQFNVSDNNLHGEVPSGFNHQVYLSGLMGNPGLCSAVIKTLPSCSKRRPFSLLAIVVLVACGSLLVGSMLWFLKSKARGKSKRSYLSTAFQRVGFNEEDILSNLTRENVIGAGSSGRVYRVRLKTGQTVAVKKLFSGAQKPDTELVFRAEIETLGRIRHANIVKLLFSCSGDEFRVLVYEYMENGSLGDVLHGEDRCGELMEWSRRFAIAVGAAQGLAYLHHDCVPAIVHRDVKSNNILLDHEFLPRVADFGLAKTLQRETTQAAAMSRVAGSYGYIAPEYAYTMKVTEKSDVYSFGVVLMELITGKRPNDSSFGENRDLVKWITETVLSPSPERGSGNMGEGKDYIMTKIVDPRLNPVTCDYDEVEKVLNVALLCTSAFPINRPSMRRVVELLKDHKLP 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00548 975 ProSitePatterns Protein kinases ATP-binding region signature. 685 708 IPR017441 GO:0005524
Spst2g00548 975 FunFam Leucine-rich repeat receptor-like protein kinase 26 186 - -
Spst2g00548 975 PRINTS Leucine-rich repeat signature 243 256 - -
Spst2g00548 975 PRINTS Leucine-rich repeat signature 288 301 - -
Spst2g00548 975 Gene3D Ribonuclease Inhibitor 26 183 IPR032675 -
Spst2g00548 975 Gene3D Ribonuclease Inhibitor 184 285 IPR032675 -
Spst2g00548 975 Gene3D Ribonuclease Inhibitor 294 622 IPR032675 -
Spst2g00548 975 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 337 970 - -
Spst2g00548 975 Gene3D Phosphorylase Kinase; domain 1 662 756 - -
Spst2g00548 975 SMART serkin_6 679 975 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst2g00548 975 ProSitePatterns Serine/Threonine protein kinases active-site signature. 803 815 IPR008271 GO:0004672|GO:0006468
Spst2g00548 975 SUPERFAMILY RNI-like 75 421 - -
Spst2g00548 975 SUPERFAMILY L domain-like 313 620 - -
Spst2g00548 975 Pfam Protein kinase domain 681 888 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst2g00548 975 FunFam Leucine-rich receptor-like protein kinase family protein 209 307 - -
Spst2g00548 975 Pfam Leucine rich repeat 145 203 IPR001611 GO:0005515
Spst2g00548 975 Pfam Leucine rich repeat 218 277 IPR001611 GO:0005515
Spst2g00548 975 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 655 756 - -
Spst2g00548 975 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
Spst2g00548 975 FunFam Leucine-rich repeat receptor-like protein kinase 757 974 - -
Spst2g00548 975 ProSiteProfiles Protein kinase domain profile. 679 975 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst2g00548 975 Gene3D Transferase(Phosphotransferase) domain 1 757 974 - -
Spst2g00548 975 SUPERFAMILY Protein kinase-like (PK-like) 671 969 IPR011009 -
Spst2g00548 975 FunFam Receptor-like protein kinase HSL1 313 618 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00548 Spst-Chr2 4494411 4497720 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00548 23 973 Receptor kinase-like Gene Family AT5G65710 57.158 0.0 1054
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Spst2g00548 Pkinase 1.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00548 - - gmx:100813889 1619.75