Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00544 ATGCGAGTGAAGACAGGGATCAGCCGCATTCAAAAGTCACCAACTGACTCGGAAAGAAAATGGGATACAATTTCACACGTGCTCCAATTGACCCGGTTTTCCAGTCAAGGCCTCTATAAACCAAGGAAACTGAAGATGATGGAGATTGCGTCCACCAACTACTTGCCTGAACTTGAAATGGAGTACCCAACCTTTCTTGATCAATACCAGATGGATTTTTTTGCTTGCCCCATGAATGAAATTGGCTTCGAGTCTTTCTCCGGATCCCCAGAGAGCAATTCATCTTATCAGTTCAACTCAGAAAGCACACCAAATTGTTTTCCAGATGAAAGTCCTGATCAGTCTTTTACCCTGGCAAGGACAACCAAGAGGCTTAAGACATTCAATACCTTCAACACTTGTGCCAGTGACTTAATTTCCCATAAGATTTCCGGTTCTCCACCCTCCCAACTTATTTCTTTTGGCCACTGTAATGCTTCACCACGTGTTTCCCAGCAATTTCACAACCTCCATATGAAGCCTAAAATCGAGAGCCCGTCTAGTGAGAACAAGGACTTTACTGCCTTCGTTTCTCAAAGATCATATGAGGACATAAATTTCCTGAGTTCTGAAAATAGAACGAACCAGGTTGGCATAACCACTAGGAATTCAATCCAAGCCCAAGAGCACGTAATAGCTGAAAGAAAACGTAGGGAAAAGCTCAGCCAGAGGTTCATTGCTCTTTCTGCCGTTCTCCCTGGCCTCAAGAAGATGGACAAGGCTTCTGTGTTGGGAGATGCTATCAAGTATGTGAAACAACTGCAAGAGCGCGTGCAAACTCTGGAGGAGCAAACAGCGAAGAACACAACTGGTTCTTCAGTCCTGGTGAAAAGATCTATTCTCTTTGCTGACGACGAAAATTCTGACAGCCACTGCGACCATTCATTCCCTGAAATCGAAGTCAGAGTTTCTGGGAAAGACGTACTCATCAGAACTCAAAGCGACAAACACAGCGGGCGTGCAGCAGTGATACTCAGCGAATTAGAAAAGCTTCATTTCATTGTCCACAGTAGCAGCCTTTTGCCCTTCGGCAATAACAATGTTGATGTAACTATTATTGCTCAGATGAAGGAGAAGTACATGGCTGCAAAGGATCTCCTAGGAAGGTTACGACAGGCTTTGAAGCAAGTTGATGGGCCTAACTAA 1185 0.4447 MRVKTGISRIQKSPTDSERKWDTISHVLQLTRFSSQGLYKPRKLKMMEIASTNYLPELEMEYPTFLDQYQMDFFACPMNEIGFESFSGSPESNSSYQFNSESTPNCFPDESPDQSFTLARTTKRLKTFNTFNTCASDLISHKISGSPPSQLISFGHCNASPRVSQQFHNLHMKPKIESPSSENKDFTAFVSQRSYEDINFLSSENRTNQVGITTRNSIQAQEHVIAERKRREKLSQRFIALSAVLPGLKKMDKASVLGDAIKYVKQLQERVQTLEEQTAKNTTGSSVLVKRSILFADDENSDSHCDHSFPEIEVRVSGKDVLIRTQSDKHSGRAAVILSELEKLHFIVHSSSLLPFGNNNVDVTIIAQMKEKYMAAKDLLGRLRQALKQVDGPN 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00544 394 Gene3D - 212 282 IPR036638 GO:0046983
Spst2g00544 394 PANTHER BHLH TRANSCRIPTION FACTOR 69 387 - -
Spst2g00544 394 CDD bHLH_AtNAI1_like 220 292 - -
Spst2g00544 394 Pfam Helix-loop-helix DNA-binding domain 221 268 IPR011598 GO:0046983
Spst2g00544 394 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 218 267 IPR011598 GO:0046983
Spst2g00544 394 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 222 282 IPR036638 GO:0046983
Spst2g00544 394 Coils Coil 257 277 - -
Spst2g00544 394 SMART finulus 224 273 IPR011598 GO:0046983
Spst2g00544 394 MobiDBLite consensus disorder prediction 92 112 - -
Spst2g00544 394 Coils Coil 366 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00544 Spst-Chr2 4433805 4435980 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00544 214 387 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 52.747 3.51e-52 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst2g00544 HLH 1.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00544 - - var:108334767 577.785