Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00543 ATGGCGAGTCCAATTCTGCGCGAAAAGCTCTCAATTCTCAAACAAAAGCTCACACATCCACGAGAAACGGAGGATTGCAACTTGTTACAACAATGTCACCTGCAGTTGCTTGAAGATGATGAAGAGTTACTTTCTCTTGAGATAGCAAGTGCCATGGAGAACTTGCAGCAACCTTTGTCTTCGGAGAGTCACACATCATATTCGGAAACCCTGATGAACTCGTTCACGGACGAAACCAGTAATTTGGAGAGGCCCACCAAGCAGCAGAAAACGAATTTCTGCAGTTGGAACTCATCCACCACCACCGCCGCCATCGAACATTTTTCACCGAATCTTTCCCCGTCTTCTTCTCCAACCTCCCAGATTATGTCTCTAGACAACTCAAACTTGTTTCCTGTCGAGAACACTCAGTTTCATGGGATTGTTTCTGCTGCCCTGAGCCCGGAGCAGAACAAAGGTTTTTCAGTTTCACCCCCAGAGACCCGAAAAGGTTCGCCGGAAAACCAGAACTTCGCAACTGAAATCCCCAAAGGGAAAGGAAGCTGCAAGATTTCCGGTCACGGTCGGGATCACATCATCGCCGAGAGAAAACGGAGAGAGAAGCTGAGCCAGAGCTTAATTTCTCTAGCTGCTCTTATTCCAGGCTTGAAGAAGATGGACAAGGCTTCAGTGCTGGGAGACGCTATAAAGTACGTGAAAGAACTCCAAGAGCGTTTGAAAATACTGGAAGAAGAGAACAAGAACAAAGGTGGGGAGTCTGTGGTGGTGGTGAACAAGTCAGGGCTGAGCTGCGACGATGGGTGTGGCAGGGAAAGCCTCCCTCGCGTGGAAGCACGAGTGTCGGAGAAGAATATGGGGACGGACAACAAGTTGACTATCAATGATCTCGTAAAGAACCTACGCGTGGCTACTTTGAAATCCATGTCCAAAACATGA 936 0.4818 MASPILREKLSILKQKLTHPRETEDCNLLQQCHLQLLEDDEELLSLEIASAMENLQQPLSSESHTSYSETLMNSFTDETSNLERPTKQQKTNFCSWNSSTTTAAIEHFSPNLSPSSSPTSQIMSLDNSNLFPVENTQFHGIVSAALSPEQNKGFSVSPPETRKGSPENQNFATEIPKGKGSCKISGHGRDHIIAERKRREKLSQSLISLAALIPGLKKMDKASVLGDAIKYVKELQERLKILEEENKNKGGESVVVVNKSGLSCDDGCGRESLPRVEARVSEKNMGTDNKLTINDLVKNLRVATLKSMSKT 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00543 311 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 186 235 IPR011598 GO:0046983
Spst2g00543 311 Coils Coil 225 252 - -
Spst2g00543 311 MobiDBLite consensus disorder prediction 150 170 - -
Spst2g00543 311 PANTHER BHLH TRANSCRIPTION FACTOR 55 285 - -
Spst2g00543 311 Pfam Helix-loop-helix DNA-binding domain 191 236 IPR011598 GO:0046983
Spst2g00543 311 SMART finulus 192 241 IPR011598 GO:0046983
Spst2g00543 311 Gene3D - 187 249 IPR036638 GO:0046983
Spst2g00543 311 Coils Coil 34 54 - -
Spst2g00543 311 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 191 248 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00543 Spst-Chr2 4406228 4408416 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00543 10 285 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 31.399 4.07e-32 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst2g00543 HLH 3.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00543 - - gmx:100816551 286.574