Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00536 ATGACCCAGATCCAAAAATTAGTACAACCCCAACACCCCAAAAACCAACAACCTCAACCAAACCCTAACACCACCACCACCATCACCCCCTCTGCTTGGATGTGGAACCCTAGGGAACAACTGCAGCAGGAAGATGATGATGACTCATGGGAGGTCAGAGCTTTTGCAGAAGACACAAGGAACATAATGGGAACCACATGGCCTCCAAGGTCCTACACCTGCACCTACTGCAGAAGGGAGTTCCGTTCCGCCCAAGCTCTCGGAGGCCATATGAACGTCCACCGCCGCGACCGTGCTCGCCTCCACCACCACCTCTTCTCGTCCCACTTCTCCACCCTTCATCAACATCCCTCCTCAAGACCTTGTTGCAAATGCTGGCTTGTGCCTCCTCTACCACTTGCCATCAAGCCCTAG 414 0.5386 MTQIQKLVQPQHPKNQQPQPNPNTTTTITPSAWMWNPREQLQQEDDDDSWEVRAFAEDTRNIMGTTWPPRSYTCTYCRREFRSAQALGGHMNVHRRDRARLHHHLFSSHFSTLHQHPSSRPCCKCWLVPPLPLAIKP 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00536 137 ProSiteProfiles Zinc finger C2H2 type domain profile. 72 99 IPR013087 -
Spst2g00536 137 MobiDBLite consensus disorder prediction 1 33 - -
Spst2g00536 137 Pfam C2H2-type zinc finger 72 96 - -
Spst2g00536 137 Gene3D Classic Zinc Finger 63 119 - -
Spst2g00536 137 ProSitePatterns Zinc finger C2H2 type domain signature. 74 94 IPR013087 -
Spst2g00536 137 PANTHER OS07G0101800 PROTEIN 44 118 - -
Spst2g00536 137 SUPERFAMILY beta-beta-alpha zinc fingers 69 99 IPR036236 -
Spst2g00536 137 SMART c2h2final6 72 94 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00536 Spst-Chr2 4322588 4323001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00536 28 132 C2H2 Transcription Factor Family AT4G17810 57.547 2.22e-38 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst2g00536 zf-C2H2_6 1.2e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00536 - - gmx:100818142 146.362