Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00533 ATGGATTCTCGGGAACCGCACCAGCAACCGCAACCACCAAACATTATGGTGGGACCCACCTCCTTCCCTTCCATGTTGGCACCCGCCACTGCCCGATTTCCTTTTATCAGCAACAACAACCATCACCACAACCCTCCCCCTCCTCCTCCTCCCCCACCTCCGCCCGAGCCTCTCAACAACAACAACACCATGTGCGAGGCTGCGTTGAAGCCGTGTACGCTCGCAGTCGGTTCCTCGGAGTCCTCCAAGAAGAAGAGGGGCCGGCCCAGAAAGTACTCACCAGATGGCAACATTGCTTTGGGCCTTGTCCCCAACCACACCGCGGCTTCTTCCTCCGAGCCTGCCCCCAAGAAGCACCGAGGACGCCCTCCTGGCTCCGGCAAGAAGCAGATGGACGCCCTCGGAATCACTGGAACTGGTTTCACTCCCCATGTTATCTCCGCCGAAGCTGGGGAGGACATTGCTGCAAAAATTATGGCCTTCTGTGAGCAAGGACCACGGACAGTTTGCATTCTTTCTGCTACTGGTCCTATCCGCAATGTCACCATTAGACAGCCGCCCTCCGCCTCCTCCCTTTCTGGGACTGATGTGTCATATGAGGGTGAATTTGAGATCATATCACTTTCAGGTTTTACTCAACAATCTGAAAACAATAGTGGTCAAAACGGAATGCGTTCCTTGAATGTGAGTTTAGCAGGACGGGATGGGCGAGTATTAGGTGGTGAAGTTGCTGGAGCTCTTACTGCAGCCTCGGCAGTTCAGGTAGTTGTGGGTAGCTTTATTGCAGATTTAAAAAAGTCTAGCTCAAGTAACCTGAAATCTGGACGATCTTCGACGCCATCATCCCAATTGTTAAATTTTGGTGCACCTACAACTCCAACCACTCCTACTTCTCAAGGGCCTTCAACTGAGTCATCAGAGGATAATGAGAACAGTAATTTTAGTAAGGGCCCAGGAGGCCAGGGACTCTACAATAACAATAATGGTAGTCAGCCTATTCATAACCTGCAGATCTACCATCAACTATGGACTGGCCAAACTCAGCAGTGA 1050 0.5162 MDSREPHQQPQPPNIMVGPTSFPSMLAPATARFPFISNNNHHHNPPPPPPPPPPPEPLNNNNTMCEAALKPCTLAVGSSESSKKKRGRPRKYSPDGNIALGLVPNHTAASSSEPAPKKHRGRPPGSGKKQMDALGITGTGFTPHVISAEAGEDIAAKIMAFCEQGPRTVCILSATGPIRNVTIRQPPSASSLSGTDVSYEGEFEIISLSGFTQQSENNSGQNGMRSLNVSLAGRDGRVLGGEVAGALTAASAVQVVVGSFIADLKKSSSSNLKSGRSSTPSSQLLNFGAPTTPTTPTSQGPSTESSEDNENSNFSKGPGGQGLYNNNNGSQPIHNLQIYHQLWTGQTQQ 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00533 349 Gene3D - 143 274 - -
Spst2g00533 349 Pfam Plants and Prokaryotes Conserved (PCC) domain 143 260 IPR005175 -
Spst2g00533 349 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 40 313 IPR039605 GO:0003680
Spst2g00533 349 MobiDBLite consensus disorder prediction 268 331 - -
Spst2g00533 349 CDD DUF296 142 260 IPR005175 -
Spst2g00533 349 MobiDBLite consensus disorder prediction 1 132 - -
Spst2g00533 349 ProSiteProfiles PPC domain profile profile. 138 282 IPR005175 -
Spst2g00533 349 SUPERFAMILY Formin homology 2 domain (FH2 domain) 45 55 - -
Spst2g00533 349 SMART AT_hook_2 117 129 IPR017956 GO:0003677
Spst2g00533 349 SMART AT_hook_2 83 95 IPR017956 GO:0003677
Spst2g00533 349 MobiDBLite consensus disorder prediction 41 59 - -
Spst2g00533 349 SUPERFAMILY AF0104/ALDC/Ptd012-like 140 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00533 Spst-Chr2 4296230 4299277 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00533 83 349 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 43.590 1.45e-62 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00533 - - pvu:PHAVU_002G006700g 536.184