Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00529 ATGCCGATTCCACTTGCCCCCTACCCTCCACTCCCTCCATATGCGCCTCCACCAAATGGTGCGCAGAGTCAAGTTGTCTGTTCTGGGTGTAGAAACCTTCTGCTCTATCCAGTTGGAGCCACATCTGTGTGCTGTGCTGTTTGCAATGCATTAACAACTGTGCCACCTGCTGAAATGGCCCAGTTAGTGTGTGGAGGCTGTCACACTTTGCTCATGTACATCCGTGGAGCGACAAGTGTGCAATGCTCTTGTTGTCACACAGTCAATCTAGCTTTGGAAGCAAATCAGGTGGCACATGTCAACTGTGGAAACTGCAAGATGCTACTGAGGTACCAATATGGAGCAAGATCCGTGAAATGTGCGGTTTGCAGTTTTGTAACATCAGTTGGGGCCTCAACAAGCACCACTGAGCAGAAATTCAGCACCTAA 429 0.4942 MPIPLAPYPPLPPYAPPPNGAQSQVVCSGCRNLLLYPVGATSVCCAVCNALTTVPPAEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCKMLLRYQYGARSVKCAVCSFVTSVGASTSTTEQKFST 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00529 142 Pfam LSD1 zinc finger 102 126 IPR005735 -
Spst2g00529 142 Pfam LSD1 zinc finger 27 50 IPR005735 -
Spst2g00529 142 Pfam LSD1 zinc finger 64 88 IPR005735 -
Spst2g00529 142 NCBIfam zinc finger domain, LSD1 subclass 24 54 IPR005735 -
Spst2g00529 142 NCBIfam zinc finger domain, LSD1 subclass 61 90 IPR005735 -
Spst2g00529 142 NCBIfam zinc finger domain, LSD1 subclass 99 128 IPR005735 -
Spst2g00529 142 PANTHER PROTEIN LSD1 15 54 IPR040319 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00529 Spst-Chr2 4256528 4258243 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Spst2g00529 zf-LSD1 1.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00529 - - vun:114174628 262.307