Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00510 ATGGTTTGCACTGCCAATGATTTACAAGGATGGAAAGATTTTCCAAAGGGACTTAGGGTTCTTCTGCTTGACGGAGATAGAAGTTCTGCTTCCGAGATAAGAGAACAGCTTGAGGCCATGGACTATAATGTTTCTACCTTCTATGACGTGAATGAAGCTTTGTCAGCAATATCAAGTAGTCCTGAAGGCTTCCATGTCGCCATAGTGGAGGTGAGTACAAGCAGTAGCCTTGGAGGTTTCAAATTTCTTGAGAATGCAAAGGACTTGCCTACCATTATGACTTCAAAGAACCAGTGCCTGAACACAACGATGAAGTGCATTGCGCTTGGTGCCGTTGAGTTCCTCAGTAAACCACTCTCTGAGGACAAGCTCAAAAATATTTGGCAGCATGTTGTTCACAAGGCTTTTAATGCTGGGGAAAATGTTCTGTCTGAATCTCTAAAACCTATCAAAGAATCTGTAGAATCAGTGCTGCAGCTTCAAACAGACAATCAACATGATAAAACTCATAAAAGGACAATGTCGATTGATTTAGAGAATGTGTCCAGGTTTAGTGATGATGACAATGAGCAATCTGTATGTGATAAATATCCGGCTCCATCAACCCCTCAATTGAAACATGGGACACGGTTACTAGATGATGGAGATTGTCATGAGCAAACTAATTTCTCAACAGAAAAAGAAAGTGAGGAACATGGTGGGGAATGCAAATCTGTCGAAACTTCATGCGAGAATTTGAATGCTGAAAGTTCTCCTCAACCAATGGAACTCAAGCAGACTCTGATTAAGGAAGAGGATTTTGCTAATGGTTCCCAGGGCGAGAGAGCTGTTTCACTGAATCCAAACATGGAAAAGATCCATGGCAATGCAGATGGTAATACATCTCCAAAAAAGACGGAAGTACTTAATGATTCATGTGAGATTAAAGCTAATCGGAAGAAGATGAAAGTAGACTGGACACCTGAGCTGCATAAAAAATTTGTGAAGGCTGTCGAACAACTAGGTATTGATCAAGCCATTCCTTCTAGAATATTGGAGATAATGAAGGTAGAAGATTTGACAAGGCACAACGTGGCAAGCCATCTTCAGAAATATAGAATACACAAGAGACAAAGTGCACCAGGGGAAGAAGATCGAAAATGGCATAATCAAAGGGATGCAACGCAAAGGAGCTATTATCTGCAAAGACCAATCATGGCCTACCCTCCCTACCATTCAAACCCCACCCCTTCTCCAGCTCCTATATATCCTATGTGGGGACAACCTGGAAGTCAATCAGCCGGGGTACAGATTTGGGGGCCTCCTGCATATCCCTTGTGGCATCCTACAGAGAGTTGGCACTGGAAGCCTTATCCGGGGGTGCATGTGGATGCTTGGGGATGCCCATTGTTCCCACCTCCTCAAGCTCCTGGTTTTCCCTACAATCAAAACGTACCTGGATTGCAAACTCCTAAAGCAGCGGAATATAGGTTCAGCATGCCACGTAGTTCCTTTGAACATCATCCGGCAGAGGAGGTTGTAGACAAGGTTGTGAAGGAAGCAATTAACAAGCCATGGCTACCGTTGCCCTTGGGACTCAAAGCTCCTTCCATGGATAGTGTGTTGGCTGAGCTCTCCAAACAAGGGATATCCAGCATCCCTAACAAGGGGTCTTCTGCTCCAAAACCCTGCTGA 1674 0.4409 MVCTANDLQGWKDFPKGLRVLLLDGDRSSASEIREQLEAMDYNVSTFYDVNEALSAISSSPEGFHVAIVEVSTSSSLGGFKFLENAKDLPTIMTSKNQCLNTTMKCIALGAVEFLSKPLSEDKLKNIWQHVVHKAFNAGENVLSESLKPIKESVESVLQLQTDNQHDKTHKRTMSIDLENVSRFSDDDNEQSVCDKYPAPSTPQLKHGTRLLDDGDCHEQTNFSTEKESEEHGGECKSVETSCENLNAESSPQPMELKQTLIKEEDFANGSQGERAVSLNPNMEKIHGNADGNTSPKKTEVLNDSCEIKANRKKMKVDWTPELHKKFVKAVEQLGIDQAIPSRILEIMKVEDLTRHNVASHLQKYRIHKRQSAPGEEDRKWHNQRDATQRSYYLQRPIMAYPPYHSNPTPSPAPIYPMWGQPGSQSAGVQIWGPPAYPLWHPTESWHWKPYPGVHVDAWGCPLFPPPQAPGFPYNQNVPGLQTPKAAEYRFSMPRSSFEHHPAEEVVDKVVKEAINKPWLPLPLGLKAPSMDSVLAELSKQGISSIPNKGSSAPKPC 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00510 557 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 311 370 IPR017930 -
Spst2g00510 557 Pfam Myb-like DNA-binding domain 317 366 IPR001005 -
Spst2g00510 557 SUPERFAMILY Homeodomain-like 313 370 IPR009057 -
Spst2g00510 557 FunFam Two-component response regulator-like APRR2 17 143 - -
Spst2g00510 557 Gene3D - 18 145 - -
Spst2g00510 557 Pfam Response regulator receiver domain 20 126 IPR001789 GO:0000160
Spst2g00510 557 Gene3D - 310 371 - -
Spst2g00510 557 SMART REC_2 18 128 IPR001789 GO:0000160
Spst2g00510 557 MobiDBLite consensus disorder prediction 209 236 - -
Spst2g00510 557 FunFam Two-component response regulator 310 372 - -
Spst2g00510 557 MobiDBLite consensus disorder prediction 197 236 - -
Spst2g00510 557 NCBIfam myb-like DNA-binding domain, SHAQKYF class 314 369 IPR006447 GO:0003677
Spst2g00510 557 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Spst2g00510 557 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 549 IPR044825 GO:0003700|GO:0045893
Spst2g00510 557 SUPERFAMILY CheY-like 16 139 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00510 Spst-Chr2 4123189 4128197 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00510 1 548 Response Regulator Gene Family AT4G18020 49.485 1.37e-146 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Spst2g00510 Response_reg 2.6e-09 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00510 - - vun:114173738 1007.28