Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00456 ATGCTGTTCATGGTTGCCATATGGTACGACATGATACCCGACAAGACCGTTGCTTGGAGTGCAAAAACAGGCAACAAACTTGCAACAGCACCAACGGGTTCACAGGTTCGGATCACGTCAGACGGGCTAACACTGGCAGGTCCCAAAGGAGATTCCATATGGAACTCCATTTTGGAAGGTATTGTCTCCCAAGGATCTATGCTTGACACGGGCAACTTTGTTCTACTGGATGAGAACTCTGAAAAAGTGTGGCAAAGTTTTGATTACCCCACAGACACGTTGTTGCCTAGCCAAACCCTCCAACTCGGAGGCAAGCTGACTTCTCGATTGACAGACAACAATTACACAAGTGGAAGGTTCCAACTGCATTTCAAGGATGGTAATGTGTTACTGAGTCCTCTTGCTTGGCCTTCTACAGAGTTTTACAACTCTTATTATGTGTTGAATGCCTCTGGTGCTGCTTCAAAATTAGTGTTCAATGAATCAGGGGATATTGGAGTTTTCACACAGTATGCTCATCTAAGGAACAGCACTGCTCAGCCAGGGTGGAGAATCAAGAGGTATGTTCCTGACGACATTTGCAGTGCAATAACTAATGACTTTGGTAGCGGTTCCTGTGGCTACAATAGCTACTGTTCCATGGACAGTCACATGCCTACTTGCAAATGCCCTTATGGGTATTCGCTAGTGGATCCAAGTAATCAGTTTCGTGGATGCCAACCCAATTTCACCCTCGTTTGTGGAGCCGATGTTCAAACACCACCAGAAGAACTATATGAAATGCATGAATCTCAGGGTTTCAATTTTCCTCTGGGAGATTATGAAAAGATAGAACCTTATTCTCACGAGAAATGCCAACAGTCTTGCTTGCAAGATTGCACGTGTGCTATGGTCGTTTCCGGAAACAACGTTTATCCTGGTGCAAACAGTGAACTCCCCCCCGCCCCCACTCCGGATTCAAAGAAAGAATACAAAGCTAAGCTGTTTCTTTTGGGACCACTAATTGGTTCCCTTGTCCTTAACAGTGTTCTCCTTGCTGCGGTTGCTTTGTTTTCTCTCATGAAGCCGAAAGTGAAAAGGGTTGTCACAGCTGCTACTAGTCTTTTGGAAACAAATTTGCATTCGTTTACTTATGAAACATTGGAAAAGGCCACATGGGGTTTTAAAGAGGAAATAGGCAGAGGTTCTTATGGCATTGTTTACAAAGGGCAGCTAGAAGTAGGTTCTTGTTGTGTGGTTGCGGTGAAGAGATTGGACAGATTTGTAGAAGAACGAGAGAGAGAATTTAGGACTGAATTGAGTTCCATCGGTAAAACCTTCCACAAAAATCTGGTAAGGTTGATTGGATTTTGTGACGAGGGAATCAATATAATACTGGTGTACGAGTTCATGAGCAATGGTAGTCTTGCAGACATCCTGTTTGGACAAACCAACCCCAAATGGAATGTAAGGGTTGGATTTGCTCTGGGGATTGCAAGAGGGTTGGTGTACTTGCACGAAGAGTGTGACACTCCCATCATTCATTGTGATATAAAACCTCAAAATATACTCATAGAAGAGTATTTGAATCCAAAGATATCTGACTTTGGGTTGGCCAAGTTGTTGTTGTCTGACCAAAGTAGAACCACTACCATGATCCGAGGAACTCGAGGATATGTGGCTCCTGAATGGTTCAAGAATGTTGCTGTGACGGTTAAAGTGGATGTTTACAGTTTTGGGGTAATGTTGTTGGAAATTATTTGCAGCAGAAAAAGCGTGTTGATGATGGAGTCCGGGGAAGAAGAGAAGACATTGCTGACAGATTGGGCCTGTGATTGCTATATGGAAGGGAGAATAGATGTTCTGGTGGAGAATGATGATGAGGCCTTAAATGACAATGTCAGGCTCCAAAACTGGGTCAAAATAACCCACCATCTCCTTTTCTCACACACTCCATACCTTAATTAA 1947 0.4366 MLFMVAIWYDMIPDKTVAWSAKTGNKLATAPTGSQVRITSDGLTLAGPKGDSIWNSILEGIVSQGSMLDTGNFVLLDENSEKVWQSFDYPTDTLLPSQTLQLGGKLTSRLTDNNYTSGRFQLHFKDGNVLLSPLAWPSTEFYNSYYVLNASGAASKLVFNESGDIGVFTQYAHLRNSTAQPGWRIKRYVPDDICSAITNDFGSGSCGYNSYCSMDSHMPTCKCPYGYSLVDPSNQFRGCQPNFTLVCGADVQTPPEELYEMHESQGFNFPLGDYEKIEPYSHEKCQQSCLQDCTCAMVVSGNNVYPGANSELPPAPTPDSKKEYKAKLFLLGPLIGSLVLNSVLLAAVALFSLMKPKVKRVVTAATSLLETNLHSFTYETLEKATWGFKEEIGRGSYGIVYKGQLEVGSCCVVAVKRLDRFVEEREREFRTELSSIGKTFHKNLVRLIGFCDEGINIILVYEFMSNGSLADILFGQTNPKWNVRVGFALGIARGLVYLHEECDTPIIHCDIKPQNILIEEYLNPKISDFGLAKLLLSDQSRTTTMIRGTRGYVAPEWFKNVAVTVKVDVYSFGVMLLEIICSRKSVLMMESGEEEKTLLTDWACDCYMEGRIDVLVENDDEALNDNVRLQNWVKITHHLLFSHTPYLN 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00456 648 Gene3D Phosphorylase Kinase; domain 1 350 463 - -
Spst2g00456 648 ProSitePatterns Protein kinases ATP-binding region signature. 392 416 IPR017441 GO:0005524
Spst2g00456 648 ProSiteProfiles Bulb-type lectin domain profile. 1 88 IPR001480 -
Spst2g00456 648 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 2 636 - -
Spst2g00456 648 ProSiteProfiles Protein kinase domain profile. 386 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst2g00456 648 Gene3D Transferase(Phosphotransferase) domain 1 464 642 - -
Spst2g00456 648 Pfam D-mannose binding lectin 16 102 IPR001480 -
Spst2g00456 648 Gene3D - 5 94 - -
Spst2g00456 648 SUPERFAMILY alpha-D-mannose-specific plant lectins 3 130 IPR036426 -
Spst2g00456 648 SMART serkin_6 386 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst2g00456 648 FunFam S-receptor-like serine/threonine-protein kinase 355 463 - -
Spst2g00456 648 ProSitePatterns Serine/Threonine protein kinases active-site signature. 506 518 IPR008271 GO:0004672|GO:0006468
Spst2g00456 648 SMART blect_4 2 90 IPR001480 -
Spst2g00456 648 FunFam Putative receptor-like protein kinase 464 643 - -
Spst2g00456 648 Pfam Protein kinase domain 389 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst2g00456 648 SUPERFAMILY Protein kinase-like (PK-like) 370 605 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00456 Spst-Chr2 3607359 3609413 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00456 372 636 Receptor kinase-like Gene Family AT1G60800 41.912 4.80e-58 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Spst2g00456 Pkinase 1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00456 - - gmx:100789263 885.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g00456 2 3607359 3609413 Spst2g00456 2 3607359 3609413 ECH