Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Spst2g00456 | ATGCTGTTCATGGTTGCCATATGGTACGACATGATACCCGACAAGACCGTTGCTTGGAGTGCAAAAACAGGCAACAAACTTGCAACAGCACCAACGGGTTCACAGGTTCGGATCACGTCAGACGGGCTAACACTGGCAGGTCCCAAAGGAGATTCCATATGGAACTCCATTTTGGAAGGTATTGTCTCCCAAGGATCTATGCTTGACACGGGCAACTTTGTTCTACTGGATGAGAACTCTGAAAAAGTGTGGCAAAGTTTTGATTACCCCACAGACACGTTGTTGCCTAGCCAAACCCTCCAACTCGGAGGCAAGCTGACTTCTCGATTGACAGACAACAATTACACAAGTGGAAGGTTCCAACTGCATTTCAAGGATGGTAATGTGTTACTGAGTCCTCTTGCTTGGCCTTCTACAGAGTTTTACAACTCTTATTATGTGTTGAATGCCTCTGGTGCTGCTTCAAAATTAGTGTTCAATGAATCAGGGGATATTGGAGTTTTCACACAGTATGCTCATCTAAGGAACAGCACTGCTCAGCCAGGGTGGAGAATCAAGAGGTATGTTCCTGACGACATTTGCAGTGCAATAACTAATGACTTTGGTAGCGGTTCCTGTGGCTACAATAGCTACTGTTCCATGGACAGTCACATGCCTACTTGCAAATGCCCTTATGGGTATTCGCTAGTGGATCCAAGTAATCAGTTTCGTGGATGCCAACCCAATTTCACCCTCGTTTGTGGAGCCGATGTTCAAACACCACCAGAAGAACTATATGAAATGCATGAATCTCAGGGTTTCAATTTTCCTCTGGGAGATTATGAAAAGATAGAACCTTATTCTCACGAGAAATGCCAACAGTCTTGCTTGCAAGATTGCACGTGTGCTATGGTCGTTTCCGGAAACAACGTTTATCCTGGTGCAAACAGTGAACTCCCCCCCGCCCCCACTCCGGATTCAAAGAAAGAATACAAAGCTAAGCTGTTTCTTTTGGGACCACTAATTGGTTCCCTTGTCCTTAACAGTGTTCTCCTTGCTGCGGTTGCTTTGTTTTCTCTCATGAAGCCGAAAGTGAAAAGGGTTGTCACAGCTGCTACTAGTCTTTTGGAAACAAATTTGCATTCGTTTACTTATGAAACATTGGAAAAGGCCACATGGGGTTTTAAAGAGGAAATAGGCAGAGGTTCTTATGGCATTGTTTACAAAGGGCAGCTAGAAGTAGGTTCTTGTTGTGTGGTTGCGGTGAAGAGATTGGACAGATTTGTAGAAGAACGAGAGAGAGAATTTAGGACTGAATTGAGTTCCATCGGTAAAACCTTCCACAAAAATCTGGTAAGGTTGATTGGATTTTGTGACGAGGGAATCAATATAATACTGGTGTACGAGTTCATGAGCAATGGTAGTCTTGCAGACATCCTGTTTGGACAAACCAACCCCAAATGGAATGTAAGGGTTGGATTTGCTCTGGGGATTGCAAGAGGGTTGGTGTACTTGCACGAAGAGTGTGACACTCCCATCATTCATTGTGATATAAAACCTCAAAATATACTCATAGAAGAGTATTTGAATCCAAAGATATCTGACTTTGGGTTGGCCAAGTTGTTGTTGTCTGACCAAAGTAGAACCACTACCATGATCCGAGGAACTCGAGGATATGTGGCTCCTGAATGGTTCAAGAATGTTGCTGTGACGGTTAAAGTGGATGTTTACAGTTTTGGGGTAATGTTGTTGGAAATTATTTGCAGCAGAAAAAGCGTGTTGATGATGGAGTCCGGGGAAGAAGAGAAGACATTGCTGACAGATTGGGCCTGTGATTGCTATATGGAAGGGAGAATAGATGTTCTGGTGGAGAATGATGATGAGGCCTTAAATGACAATGTCAGGCTCCAAAACTGGGTCAAAATAACCCACCATCTCCTTTTCTCACACACTCCATACCTTAATTAA | 1947 | 0.4366 | MLFMVAIWYDMIPDKTVAWSAKTGNKLATAPTGSQVRITSDGLTLAGPKGDSIWNSILEGIVSQGSMLDTGNFVLLDENSEKVWQSFDYPTDTLLPSQTLQLGGKLTSRLTDNNYTSGRFQLHFKDGNVLLSPLAWPSTEFYNSYYVLNASGAASKLVFNESGDIGVFTQYAHLRNSTAQPGWRIKRYVPDDICSAITNDFGSGSCGYNSYCSMDSHMPTCKCPYGYSLVDPSNQFRGCQPNFTLVCGADVQTPPEELYEMHESQGFNFPLGDYEKIEPYSHEKCQQSCLQDCTCAMVVSGNNVYPGANSELPPAPTPDSKKEYKAKLFLLGPLIGSLVLNSVLLAAVALFSLMKPKVKRVVTAATSLLETNLHSFTYETLEKATWGFKEEIGRGSYGIVYKGQLEVGSCCVVAVKRLDRFVEEREREFRTELSSIGKTFHKNLVRLIGFCDEGINIILVYEFMSNGSLADILFGQTNPKWNVRVGFALGIARGLVYLHEECDTPIIHCDIKPQNILIEEYLNPKISDFGLAKLLLSDQSRTTTMIRGTRGYVAPEWFKNVAVTVKVDVYSFGVMLLEIICSRKSVLMMESGEEEKTLLTDWACDCYMEGRIDVLVENDDEALNDNVRLQNWVKITHHLLFSHTPYLN | 648 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Spst2g00456 | 648 | Gene3D | Phosphorylase Kinase; domain 1 | 350 | 463 | - | - | |
Spst2g00456 | 648 | ProSitePatterns | Protein kinases ATP-binding region signature. | 392 | 416 | IPR017441 | GO:0005524 | |
Spst2g00456 | 648 | ProSiteProfiles | Bulb-type lectin domain profile. | 1 | 88 | IPR001480 | - | |
Spst2g00456 | 648 | PANTHER | G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 | 2 | 636 | - | - | |
Spst2g00456 | 648 | ProSiteProfiles | Protein kinase domain profile. | 386 | 647 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Spst2g00456 | 648 | Gene3D | Transferase(Phosphotransferase) domain 1 | 464 | 642 | - | - | |
Spst2g00456 | 648 | Pfam | D-mannose binding lectin | 16 | 102 | IPR001480 | - | |
Spst2g00456 | 648 | Gene3D | - | 5 | 94 | - | - | |
Spst2g00456 | 648 | SUPERFAMILY | alpha-D-mannose-specific plant lectins | 3 | 130 | IPR036426 | - | |
Spst2g00456 | 648 | SMART | serkin_6 | 386 | 640 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Spst2g00456 | 648 | FunFam | S-receptor-like serine/threonine-protein kinase | 355 | 463 | - | - | |
Spst2g00456 | 648 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 506 | 518 | IPR008271 | GO:0004672|GO:0006468 | |
Spst2g00456 | 648 | SMART | blect_4 | 2 | 90 | IPR001480 | - | |
Spst2g00456 | 648 | FunFam | Putative receptor-like protein kinase | 464 | 643 | - | - | |
Spst2g00456 | 648 | Pfam | Protein kinase domain | 389 | 585 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Spst2g00456 | 648 | SUPERFAMILY | Protein kinase-like (PK-like) | 370 | 605 | IPR011009 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Spst2g00456 | Spst-Chr2 | 3607359 | 3609413 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Spst2g00456 | 372 | 636 | Receptor kinase-like Gene Family | AT1G60800 | 41.912 | 4.80e-58 | 203 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_SD-2b | Spst2g00456 | Pkinase | 1e-45 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Spst2g00456 | - | - | gmx:100789263 | 885.56 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Spst2g00456 | 2 | 3607359 | 3609413 | Spst2g00456 | 2 | 3607359 | 3609413 | ECH |