Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00446 ATGGCGGCTGAAAAGGAGGATTTGGGTTTGAGTCTAAGCTTGAGCTTCCCTCATAACCCTCCAACTCCTCTTCATCTCAATCTCATATCTTCTTCCACTCATTCCTCTTCTCCTTCAAGCCACAACCATAACAAACCCTCTTGGAACGAGGCTTTCACTTCTTCAGGTGAAGCTGGATCGTTCCTTCGCGGAATCGATGTGAACCGGTTACCTTCTGCGGTTGATTGCGAAGAGGAAGCAGGTGTTTCATCTCCAAACAGCACGGTTTCTAGCGTGAGCGAAAAGCGTAGCGAGAGGGAAGCCAATGGGGAAGAAGAACACGACACAGAACGAGGTTGTTTCAGAGGCATCAGTGACGAAGAAGAAGGCGAAACTTCTAGAAAGAAACTCAGACTCTCCAAAGACCAATCAATTATTCTGGAAGAGAGCTTCAAAGAACACAACACTCTTAACCCGAAACAAAAGTTGGCACTGGCGAAAAAGTTGGGTCTTCGAGCAAGACAAGTGGAGGTGTGGTTTCAGAACAGAAGGGCAAGGACGAAGCTGAAACAAACGGAGGTGGACTGCGAGTTTTTGAAAAGGTGCTGCGAGAATCTGACGGAGGAAAACAGAAGGTTGCAGAAGGAAGTGCAAGAGCTTAGAGCACTGAAACTTTCCCCTCAGTTCTACATGCAAATGAGCCCACCCACTACCCTCACCATGTGCCCCTCTTGTGAGCGTGTCGCTGTTCCCTCTTCCTCTGTCGTCGATGCTGCCACGCGTCACCATCACGTGCCCCAAACCCACCCTCGGGCCTTTCCCATTGGCCCATGGGCCTCCTCTGCCGCTCCTATTTCACACAGGCCCTTCGATGCCCTCCGTCCCAGATCTTGA 873 0.5052 MAAEKEDLGLSLSLSFPHNPPTPLHLNLISSSTHSSSPSSHNHNKPSWNEAFTSSGEAGSFLRGIDVNRLPSAVDCEEEAGVSSPNSTVSSVSEKRSEREANGEEEHDTERGCFRGISDEEEGETSRKKLRLSKDQSIILEESFKEHNTLNPKQKLALAKKLGLRARQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMSPPTTLTMCPSCERVAVPSSSVVDAATRHHHVPQTHPRAFPIGPWASSAAPISHRPFDALRPRS 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00446 290 Gene3D - 131 181 - -
Spst2g00446 290 FunFam Homeobox-leucine zipper protein HAT22 131 177 - -
Spst2g00446 290 ProSiteProfiles 'Homeobox' domain profile. 123 183 IPR001356 GO:0003677
Spst2g00446 290 MobiDBLite consensus disorder prediction 93 129 - -
Spst2g00446 290 ProSitePatterns 'Homeobox' domain signature. 158 181 IPR017970 GO:0000981|GO:0006355
Spst2g00446 290 Coils Coil 182 219 - -
Spst2g00446 290 SMART halz 183 226 IPR003106 GO:0006355|GO:0043565
Spst2g00446 290 MobiDBLite consensus disorder prediction 1 51 - -
Spst2g00446 290 SMART HOX_1 125 187 IPR001356 GO:0003677
Spst2g00446 290 Pfam HD-ZIP protein N terminus 3 100 IPR006712 GO:0005634
Spst2g00446 290 MobiDBLite consensus disorder prediction 15 51 - -
Spst2g00446 290 Pfam Homeodomain 127 181 IPR001356 GO:0003677
Spst2g00446 290 SUPERFAMILY Homeodomain-like 120 184 IPR009057 -
Spst2g00446 290 MobiDBLite consensus disorder prediction 76 129 - -
Spst2g00446 290 PRINTS Lambda-repressor HTH signature 154 163 IPR000047 GO:0003677
Spst2g00446 290 PRINTS Lambda-repressor HTH signature 163 179 IPR000047 GO:0003677
Spst2g00446 290 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 36 257 - -
Spst2g00446 290 Pfam Homeobox associated leucine zipper 183 217 IPR003106 GO:0006355|GO:0043565
Spst2g00446 290 CDD homeodomain 127 184 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00446 Spst-Chr2 3551056 3552413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00446 1 290 Homeobox Transcription Factor Family AT5G47370 62.376 4.01e-114 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Spst2g00446 HD-ZIP_N 4.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00446 K09338 - gmx:100783851 439.884