Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00440 ATGGCACCCCCCAAGAACGATGAATCAGCCAAGAAAACTAGCAACAGAGCATGGACCGCGGAGGAAGATCAAAAGCTAGCCCAATGCATTGAGATTCATGGTGCAAAGAGGTGGAAAACTGTTGCTATTAAATCAGGTCTAAACAGATGTGGGAAAAGTTGCAGGTTGAGATGGTTAAACTATCTGAGACCCAATATCAAGAGGGGCAACATATCAGTGGAAGAAGAGGATTTGATCATTAGGCTTCACAAACTGCTGGGAAACAGGTGGTCATTGATAGCTAAGAGGCTTCCAGGACGAACAGACAATGAAATTAAGAACTACTGGAATACTTGTTTGTGCAAAAAGGTTAATCATCACACGAAGGTGAAACCAAAAATTTCAATGGCACAACCAACACAGTTGACTCAGAATACTGAGGAAAAAGTAGCAGTAGAGAATAAAGAAGTCACTGATGATGGGGACTCAGAAGTTAACTTTGATGTCAACGAATTCTTCAACTTCTCCATTGAAGGACCCTATGCGTTGGATTGGATGATCTAG 543 0.418 MAPPKNDESAKKTSNRAWTAEEDQKLAQCIEIHGAKRWKTVAIKSGLNRCGKSCRLRWLNYLRPNIKRGNISVEEEDLIIRLHKLLGNRWSLIAKRLPGRTDNEIKNYWNTCLCKKVNHHTKVKPKISMAQPTQLTQNTEEKVAVENKEVTDDGDSEVNFDVNEFFNFSIEGPYALDWMI 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00440 180 Gene3D - 71 150 - -
Spst2g00440 180 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Spst2g00440 180 Pfam Myb-like DNA-binding domain 17 62 IPR001005 -
Spst2g00440 180 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 62 IPR017930 -
Spst2g00440 180 SMART sant 14 64 IPR001005 -
Spst2g00440 180 SMART sant 67 115 IPR001005 -
Spst2g00440 180 Gene3D - 16 67 - -
Spst2g00440 180 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Spst2g00440 180 FunFam Transcription factor TT2 71 144 - -
Spst2g00440 180 CDD SANT 72 111 IPR001005 -
Spst2g00440 180 FunFam Myb transcription factor 15 67 - -
Spst2g00440 180 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Spst2g00440 180 CDD SANT 17 62 IPR001005 -
Spst2g00440 180 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Spst2g00440 180 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 10 142 - -
Spst2g00440 180 SUPERFAMILY Homeodomain-like 15 109 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00440 Spst-Chr2 3501275 3501997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00440 18 162 MYB Transcription Factor Family AT5G40330 52.703 1.34e-51 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst2g00440 Myb_DNA-binding 4.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00440 K09422 - gmx:100791381 323.168