Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00439 ATGAAAGCTCTCTGTGGCAGTGACGTGATGCAAGATGCTGCACCAATAAACATTCATCCAAAAGCTTCTGTCACAGATGCTTGTGCCTACAAGTATGTTTCAGAGCTATGGCGCAAGAAGCAATCTGATGTCATGCGCTTTTTGCAGCGGGTGAGGTGCTGGGAGTACAGGCAGCAGCCTTCCATTGTTCGTTTGACAAGGCCAACCCGCCCTGACAAGGCTCGTCGCTTGGGCTATAAGGCTAAGCAGGGTTATGTGGTGTACCGTGTTCGTGTACGAAGGGGTGGCCGAAAGAGACCAGTTCCCAAAGGTATTGTTTATGGGAAGCCAACAAACCAGGGTGTTACTCAATTGAAATTCCAGCGTAGCAAGAGGTCAGTTGCTGAGGAGCGAGCTGGACGGAAGCTGGGTGGACTTAGGGTCCTCAACTCTTACTGGGTGAATGAGGACTCGACTTATAAGTACTTTGAGGTAATTCTGGTTGATGTTGCTCATGCTGCTGTTAGAAATGATCCCAGAATTAATTGGCTCTGCAATCCAGTGCATAAGCACAGGGAGCTGCGTGGGCTCACCTCTGCCGGGAAAAGCAACAGGGGTTTACGTGGCAGAGGACATCTGTACCACAAAGCTCGTCCATCCCGCAGGGCAACCTGGAAAAGGAACAATACCCTTTCACTTCGCCGCTACCGCTAA 693 0.5051 MKALCGSDVMQDAAPINIHPKASVTDACAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFEVILVDVAHAAVRNDPRINWLCNPVHKHRELRGLTSAGKSNRGLRGRGHLYHKARPSRRATWKRNNTLSLRRYR 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00439 230 FunFam Ribosomal protein L15 27 230 - -
Spst2g00439 230 Gene3D Ribosomal protein l15e 27 230 IPR024794 GO:0003735|GO:0005840
Spst2g00439 230 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 29 221 IPR012678 GO:0003735|GO:0005840|GO:0006412
Spst2g00439 230 ProSitePatterns Ribosomal protein L15e signature. 72 95 IPR020925 GO:0003735|GO:0005840|GO:0006412
Spst2g00439 230 PANTHER RIBOSOMAL PROTEIN L15 28 230 IPR000439 GO:0003735|GO:0005840|GO:0006412
Spst2g00439 230 SMART Ribosomal_L15e_2 28 219 IPR000439 GO:0003735|GO:0005840|GO:0006412
Spst2g00439 230 Pfam Ribosomal L15 29 216 IPR000439 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00439 Spst-Chr2 3493373 3499023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00439 29 230 Cytoplasmic Ribosomal Protein Gene Family AT4G16720 91.584 4.19e-125 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00439 K02877 - gmx:100306052 387.882