Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00423 ATGGAGCGCCACAAATGCAAGTTCTGTTCCAGAACATTCGCCAATGGCAGAGCCCTCGGTGGCCACATGAAGGCTCACTTAGCCACCCTTCCTCTTCCACCCAAACCCCAAAGTCTCCCTCACTCTCTAAATTCTTTCTCGTCCAATTCCTCCTCACGTCAAGAGTTCGAAGATGATGAAGGAGAAGAAAAGGCTCTGATCAACTATGCGTTGCGAGAGAATCCCAAGAAATGTTACAGGCTCGCAGATCCCGAGTTCGACTCGGGCTCTGTCGTGCAAGACAGGGAGAGCGAGACCGAGTCAAAGAACCCAACTCGCCGACGATCCAAGCGAGCCCGCAGGCCCGCCAATTCCCAGTCCATAGCCCGGCCTAAACTCAGCTTCATGGAATCCCCCGAGCCTTTGAGCTCCGTCTCCGACACTTCCCCTGAGGAAGATGTGGCCATGTGTCTCATGATGCTATCCAGGGACCGGTGGAGCAAGAGCACCAACGTTGTTGTCGACAACCATGTCGTCGAAGACGAAGAAGAGAGATCAGTGGAAGAGATCAATGTCAGGATAGTTCGCAGGAAGCACCAATGCCAGAGTTGCGAGAAGACGTTTCGATCTTCACGCGCATTGGGCAGTCACCGCAGCATTTGCGAAGGGTCGGGTAACGAAAGTAAAATCTTCGAATGCCCCTTCTGTTCTAGGGTGTTTGGGTCTGGTCAAGCACTCGGTGGCCACAAGAGATCTCACCTCGTACCTTCTTCCTCGTCAACCGCGAATGATTCCATTAGGCTCAAAGAGAGTTTCATAGATCTCAACTTGCCTGCTCCAACCGAAGAAGACGACATCAGTGTTGTTTCTGATGCCCAATTTGATGATTAA 870 0.5195 MERHKCKFCSRTFANGRALGGHMKAHLATLPLPPKPQSLPHSLNSFSSNSSSRQEFEDDEGEEKALINYALRENPKKCYRLADPEFDSGSVVQDRESETESKNPTRRRSKRARRPANSQSIARPKLSFMESPEPLSSVSDTSPEEDVAMCLMMLSRDRWSKSTNVVVDNHVVEDEEERSVEEINVRIVRRKHQCQSCEKTFRSSRALGSHRSICEGSGNESKIFECPFCSRVFGSGQALGGHKRSHLVPSSSSTANDSIRLKESFIDLNLPAPTEEDDISVVSDAQFDD 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00423 289 Pfam C2H2-type zinc finger 192 211 - -
Spst2g00423 289 Pfam C2H2-type zinc finger 224 246 - -
Spst2g00423 289 Pfam C2H2-type zinc finger 3 28 - -
Spst2g00423 289 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Spst2g00423 289 MobiDBLite consensus disorder prediction 28 61 - -
Spst2g00423 289 ProSiteProfiles Zinc finger C2H2 type domain profile. 224 246 IPR013087 -
Spst2g00423 289 SUPERFAMILY beta-beta-alpha zinc fingers 3 29 IPR036236 -
Spst2g00423 289 SMART c2h2final6 192 212 IPR013087 -
Spst2g00423 289 SMART c2h2final6 224 246 IPR013087 -
Spst2g00423 289 SMART c2h2final6 4 26 IPR013087 -
Spst2g00423 289 ProSitePatterns Zinc finger C2H2 type domain signature. 226 246 IPR013087 -
Spst2g00423 289 Gene3D Classic Zinc Finger 189 258 - -
Spst2g00423 289 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Spst2g00423 289 MobiDBLite consensus disorder prediction 87 142 - -
Spst2g00423 289 MobiDBLite consensus disorder prediction 87 105 - -
Spst2g00423 289 SUPERFAMILY beta-beta-alpha zinc fingers 190 246 IPR036236 -
Spst2g00423 289 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 287 IPR044303 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00423 Spst-Chr2 3369007 3369876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00423 1 282 C2H2 Transcription Factor Family AT3G60580 36.562 9.85e-47 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst2g00423 zf-C2H2_6 9e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00423 - - vun:114173003 459.529