LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst2g00411	ATGGAGGACCGGAATGAATCACAAGACAATAGAGAACTCTACGCACTACTCAACTTGTCTCCGGAAGCTTCCGATGAAGAAATTCGCAGAGCGTATCGTCAATGGGCGCAAGCTTATCACCCCGATAAGTACCAAGCTCCTCACATGAAGGATATTGCTACGGAGAATTTTCAACGCATATGCCAAGCGTATGAGGTTCTTTCAGATCCACATAAGAGGCAAATATATGATATCTATGGTATGGAAGGGTTGATTTCTGGTTTGGAACTTGGTCCAAAGCTCCATGGAGCTGAAGAGATCAAGGCGGAGCTTGAGAGATTGAAGAGGATGAAGGAACAGGAAAAAATTGCTGCTCATTTTCTACCTTCTGGTACAATTCTGGCCAATATATCTTTGCCGAGCTATTTGGACGGTGGTGGCCTCCTCCAAGGAATGGCTATGACAAGCGAAATCCAGTCTCACTTATCCAAGCGCAATGCTTGTACAATTGGTGGTAATTTAGCAGTGAATGGAGGTGAAGGTGGTGGAGCTGCAAATGCTGTGTTTAGGCATCAACTTTCAGAAGTTTCGTCACTTGAGTTTGTGGCTTCAGTTGGTTTGCGTGCACTAATTGGGGTGCAAACAACTCGTAATTTATCATCACACTCAGCTGCAACAATGGGTGTAGCAATGTCTTTGAGAGATGGTTCATTGAATCTTTCAAATTTATGGACCCGCCAACTGTCAGAAACAGCAAGTGGACATATAGAGCTTAATTTGGGATCACAATCATCTATAGCTGTTGGGTGGCAAAAGAAAGATCAAAGAAGGACTGCCTCTGGAGAATTGAAGTTTGGCACAGGTTTGTTTGAAGCAGCAGTTCATTGTACTCATCGTTTTTCTCCTAAATCTCTTGGCTGCATTGTGGGAAGAGTTGGAAGTTCTTCCCTTGAGATTGAAGTTGGTGGTGGTAGGAAGTTATCCAAATTCAGCTCAGTACGGTGGTTGTATATAATAGGAATTCAGGCTGGCCCAAGAGCAAAGAAGGCTGTTCCAGGCACAAATTCTAGTACTAGGTCTCCTAACTCTTGTGGAAAACGAATGCAAGGTATTTCCTGGAAATTTGAACTCTACCGTGGGGGTCAGAAGATAATTTTTCCGATTTTGCTGACAAGGCATCTTAACCCTGTGTTTGCTACTGGAGCATTTGTCATTCCTACATCTCTTTACTTTGTTCTAAAGGATTCCTTAGTTCCTCCTCGTGCCATGATTTCAATGGAAAAAGGAGGTTGTGGAGGAAGTCACACAAGTGGAAGAGGCCATTTTAGGAGCCAAGCTGTAGCATTTAAACTTCTTATTAAACCTTATTACCTTAGAAGGAATAAGCAGAAGGCTCTGGAGGAAGAGAAGAAAAGTTCTACTCAGGTTAAGGAAGCAATGGCTGCAGTAGAGAAAGCCCAGAAATTACAACAAAATGTGGCTAATAGGAAAAGAAACAGGCAATTAGAAACAGGTGGACTGGTTATTATGAGAGCACTATATGGAAATCAGATAATTTTGGACAACTTAAAGTCATCAAGTGAAACAAGTTTTGAATCAACTTCTGATGTCATTGATGTTACGATACCTCTGAATTTTCTTGTTAATGATTCTGGCCAACTCAAGCTTCACGAAGGTGTGAAAAAATCAGGCATTATGGGTTTCTGTGATCCATGTCCAGGAAGACCAAAGGAGTTGTATGTAGAGTACGTTTATGCTGGCAATCAATACCAGGTTTGGGTTGATGGAATTGGAAGAGTTCCACTCGACGCAATACAATTGGTAACGTTAGGGCAAATTATGGCGGGAGCTACTCCGTCCTGCGTTTTCTGTGCGATTGCCACCAAATCCACCTCTGACAATGCTCTTCTTCATTCGGACGATAAGGTTGTCGCATTTCAGGATATTAATCCTTCCGCTTTCAGGCATTACTTGGTAGTTCCTGTGGCGCACATTCCTACAGTTAAAGATCTTCAGAGGAAAACTGATGACTATTCTTTGGTGAATCACATGTTAGAGGTGGGGAAAACGTTATTACTTAGAGATGCGCCTCAGTCCCAGCAGTACAGATTTGGCTTTCATCAGCCTCCACTGAACACTGTCAACCACCTACACCTCCATTGTTTGGCGCTACCATATACACCCAGATGGCGATCCATAAAATACTTATCTTTTGGACCAGTTGGCTTCATTGAAGCAGAGAAGTTGCTGGAAAAGATAAAGCCATTGTCCACATTTCAATGA	2262	0.4262	MEDRNESQDNRELYALLNLSPEASDEEIRRAYRQWAQAYHPDKYQAPHMKDIATENFQRICQAYEVLSDPHKRQIYDIYGMEGLISGLELGPKLHGAEEIKAELERLKRMKEQEKIAAHFLPSGTILANISLPSYLDGGGLLQGMAMTSEIQSHLSKRNACTIGGNLAVNGGEGGGAANAVFRHQLSEVSSLEFVASVGLRALIGVQTTRNLSSHSAATMGVAMSLRDGSLNLSNLWTRQLSETASGHIELNLGSQSSIAVGWQKKDQRRTASGELKFGTGLFEAAVHCTHRFSPKSLGCIVGRVGSSSLEIEVGGGRKLSKFSSVRWLYIIGIQAGPRAKKAVPGTNSSTRSPNSCGKRMQGISWKFELYRGGQKIIFPILLTRHLNPVFATGAFVIPTSLYFVLKDSLVPPRAMISMEKGGCGGSHTSGRGHFRSQAVAFKLLIKPYYLRRNKQKALEEEKKSSTQVKEAMAAVEKAQKLQQNVANRKRNRQLETGGLVIMRALYGNQIILDNLKSSSETSFESTSDVIDVTIPLNFLVNDSGQLKLHEGVKKSGIMGFCDPCPGRPKELYVEYVYAGNQYQVWVDGIGRVPLDAIQLVTLGQIMAGATPSCVFCAIATKSTSDNALLHSDDKVVAFQDINPSAFRHYLVVPVAHIPTVKDLQRKTDDYSLVNHMLEVGKTLLLRDAPQSQQYRFGFHQPPLNTVNHLHLHCLALPYTPRWRSIKYLSFGPVGFIEAEKLLEKIKPLSTFQ	753

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst2g00411	753	Coils	Coil	94	117	-	-
	Spst2g00411	753	Pfam	Scavenger mRNA decapping enzyme C-term binding	613	724	-	-
	Spst2g00411	753	SMART	dnaj_3	11	72	IPR001623	-
	Spst2g00411	753	Pfam	DnaJ domain	13	77	IPR001623	-
	Spst2g00411	753	SUPERFAMILY	Chaperone J-domain	9	83	IPR036869	-
	Spst2g00411	753	Gene3D	DnaJ domain	1	88	IPR036869	-
	Spst2g00411	753	ProSiteProfiles	HIT domain profile.	615	728	IPR011146	GO:0003824
	Spst2g00411	753	PANTHER	CHAPERONE PROTEIN DNAJ 13	360	414	IPR042162	-
	Spst2g00411	753	ProSitePatterns	Nt-dnaJ domain signature.	57	76	IPR018253	-
	Spst2g00411	753	Pfam	DnaJ-like protein C11, C-terminal	448	588	IPR024586	-
	Spst2g00411	753	PRINTS	DnaJ domain signature	72	91	IPR001623	-
	Spst2g00411	753	PRINTS	DnaJ domain signature	52	72	IPR001623	-
	Spst2g00411	753	PRINTS	DnaJ domain signature	14	32	IPR001623	-
	Spst2g00411	753	PRINTS	DnaJ domain signature	32	47	IPR001623	-
	Spst2g00411	753	ProSiteProfiles	dnaJ domain profile.	12	80	IPR001623	-
	Spst2g00411	753	Gene3D	-	617	753	IPR036265	-
	Spst2g00411	753	Coils	Coil	472	492	-	-
	Spst2g00411	753	CDD	DnaJ	12	69	IPR001623	-
	Spst2g00411	753	SUPERFAMILY	HIT-like	612	747	IPR036265	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst2g00411	Spst-Chr2	3244797	3261777	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst2g00411	14	79	C2H2 Transcription Factor Family	AT1G74250	45.588	3.93e-08	54.7

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst2g00411	K09531		-	gmx:100817782	876.315