Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00393 ATGGCAGACGAAGCCAAAGCCAAAGGTAACGCTGCTTTCTCATCCGGCGACTATGCTGCCGCCATCCGCCACTTCTCCGACGCCATCGCCTTGTCCCCCACTAACCACGTCCTCTATTCCAACCGATCCGCCTCGTACGCGTCCCTTCAGAACTATTCCGATGCCCTAACCGATGCCAAGAAAACCGTTGAACTCAAGCCCGACTGGTCCAAGGGCTACAGCCGTCTTGGTGCCGCGCATCTTGGCCTCTCCCAATACGACGATGCCGTTTCGGCTTACAAGAAGGGCCTCGAAATCGACCCCAACAACGAGCCCCTCAAGGCAGGTTTGGCCGATGCGCAGAAGGCCCAAGCCGCGGCCTCCAGACCCCGCTCCTCCCCTGCTAACCCCTTCGGCGATGCTTTCTCTGGGCCCGAGATGTGGACCCGGCTCACCGCGGACCCCACCACTAGGGCTTACCTCCAACAGCCTGATTTCGTGAAGATGATGCAGGATATCCAGAAAGATCCTAATAAACTCAACCTGCACCTGAAGGATCAGAGAGTCATGCAAGCCATAGGGGTTTTGCTCAACGTTAAGATTCAAACCTCTCCCCCCACCGACGCTGAAATGCCTGATACTTCCGAGAGAAAGAGACCCGTTGAAGCTGAGCCCGCTAAGCAGCCCCAGCCCGAGCCTGAGCCCGAGCCGGAGCCTATGGATTTTTCTGAAGATGAGAAGAACGCGAAGCAGAGGAAGGCTGAGGCTCTGAAAGAAAAGGAAGCGGGCAATGCAGCATATAAGAAGAAGGATTTTGATACTGCAATTCAACATTACACCAAAGCTTTGGAGTTGGATGATAAGGATATATCTTATCTCACCAACCGCGCTGCTGTGTACTTGGAAATGGGAAAGTATGACGAATGTATCAAAGATTGTGATACGGCTGTTGAAAGAGGAAGAGAGCTAAGGTCAGATTTTAAAATGATAGCCAGAGCTTTGACAAGGAAAGGAACTGCTTTGGTGAAAATGGCGAAGTGCTCAAAGGATTACGATCCTGCCATTGAAACATTCCAGAAAGCACTCACTGAGCACCGCAACCCGGACACTTTGAAGAAACTTAATGAAGCTGAAAAGGCAAAGAAAGATCTAGAACAAGAAGAATATTTTGATCCAAAGTTGGCTGATGAGGAAAGAGAAAAAGGAAACGAATTCTTTAAGCAGCAGAAGTATCCCGAGGCTGTGAAGCATTACACAGAGTCTATACGAAGAAATCCGAAAGATCCTAGGGCTTATAGTAACAGAGCAGCATGCTATACTAAATTGGGGGCAATGCCTGAAGGTTTGAAGGATGCAGAGAAGTGCATTGAACTTGATCCAACTTTCGTTAAGGGTTATACCAGGAAAGGTGCGGTGCAGTATTTCATGAGGGAATATGACAAGGCTTTGGAAACATATAGGGAGGGGTTGAAATATGACGCTAACAACCAGGAGTTGCTTGAAGGCATTAGGACATGTATACAACAAATTAATAAGGCTAGCCGTGGAGACTTAAGTCCTGAAGAATTGAAGGAGAGACAGGCCAAGGCAATGCAAGATCCAGAAATTCAGAACATTCTCCAAGACCCTGTTATGAGACAGGTATTGGTTGATTTCCAGGAAAATCCCAAGGCTGCTCAGGAACATACGAAGAATCCAATGGTGATGAACAAGATTCAAAAGCTGGTCAGTGCTGGAATTGTCCAGATGAGGTAA 1734 0.4856 MADEAKAKGNAAFSSGDYAAAIRHFSDAIALSPTNHVLYSNRSASYASLQNYSDALTDAKKTVELKPDWSKGYSRLGAAHLGLSQYDDAVSAYKKGLEIDPNNEPLKAGLADAQKAQAAASRPRSSPANPFGDAFSGPEMWTRLTADPTTRAYLQQPDFVKMMQDIQKDPNKLNLHLKDQRVMQAIGVLLNVKIQTSPPTDAEMPDTSERKRPVEAEPAKQPQPEPEPEPEPMDFSEDEKNAKQRKAEALKEKEAGNAAYKKKDFDTAIQHYTKALELDDKDISYLTNRAAVYLEMGKYDECIKDCDTAVERGRELRSDFKMIARALTRKGTALVKMAKCSKDYDPAIETFQKALTEHRNPDTLKKLNEAEKAKKDLEQEEYFDPKLADEEREKGNEFFKQQKYPEAVKHYTESIRRNPKDPRAYSNRAACYTKLGAMPEGLKDAEKCIELDPTFVKGYTRKGAVQYFMREYDKALETYREGLKYDANNQELLEGIRTCIQQINKASRGDLSPEELKERQAKAMQDPEIQNILQDPVMRQVLVDFQENPKAAQEHTKNPMVMNKIQKLVSAGIVQMR 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00393 577 ProSiteProfiles TPR repeat profile. 422 455 IPR019734 GO:0005515
Spst2g00393 577 Pfam Tetratricopeptide repeat 71 103 IPR001440 GO:0005515
Spst2g00393 577 ProSiteProfiles TPR repeat region circular profile. 70 103 - -
Spst2g00393 577 MobiDBLite consensus disorder prediction 235 255 - -
Spst2g00393 577 Gene3D - 126 195 - -
Spst2g00393 577 SUPERFAMILY TPR-like 8 501 IPR011990 GO:0005515
Spst2g00393 577 ProSiteProfiles TPR repeat profile. 2 35 IPR019734 GO:0005515
Spst2g00393 577 Pfam STI1 domain 138 191 IPR041243 -
Spst2g00393 577 Pfam STI1 domain 518 569 IPR041243 -
Spst2g00393 577 Gene3D Tetratricopeptide repeat domain 1 116 IPR011990 GO:0005515
Spst2g00393 577 PANTHER TPR REPEAT CONTAINING PROTEIN 2 549 - -
Spst2g00393 577 ProSiteProfiles TPR repeat profile. 388 421 IPR019734 GO:0005515
Spst2g00393 577 SMART tpr_5 70 103 IPR019734 GO:0005515
Spst2g00393 577 SMART tpr_5 324 361 IPR019734 GO:0005515
Spst2g00393 577 SMART tpr_5 388 421 IPR019734 GO:0005515
Spst2g00393 577 SMART tpr_5 249 282 IPR019734 GO:0005515
Spst2g00393 577 SMART tpr_5 283 316 IPR019734 GO:0005515
Spst2g00393 577 SMART tpr_5 456 489 IPR019734 GO:0005515
Spst2g00393 577 SMART tpr_5 2 35 IPR019734 GO:0005515
Spst2g00393 577 SMART tpr_5 36 69 IPR019734 GO:0005515
Spst2g00393 577 SMART tpr_5 422 455 IPR019734 GO:0005515
Spst2g00393 577 Coils Coil 360 380 - -
Spst2g00393 577 MobiDBLite consensus disorder prediction 204 224 - -
Spst2g00393 577 Gene3D Tetratricopeptide repeat domain 246 382 IPR011990 GO:0005515
Spst2g00393 577 FunFam hsp70-Hsp90 organizing protein 3-like 387 501 - -
Spst2g00393 577 MobiDBLite consensus disorder prediction 110 136 - -
Spst2g00393 577 Gene3D Tetratricopeptide repeat domain 387 507 IPR011990 GO:0005515
Spst2g00393 577 FunFam Stress-induced phosphoprotein 1 1 116 - -
Spst2g00393 577 FunFam Putative stress-induced-phosphoprotein 1 127 195 - -
Spst2g00393 577 ProSiteProfiles TPR repeat profile. 70 103 IPR019734 GO:0005515
Spst2g00393 577 ProSiteProfiles TPR repeat profile. 249 282 IPR019734 GO:0005515
Spst2g00393 577 Pfam TPR repeat 395 436 - -
Spst2g00393 577 Pfam TPR repeat 256 297 - -
Spst2g00393 577 ProSiteProfiles TPR repeat profile. 456 489 IPR019734 GO:0005515
Spst2g00393 577 FunFam Stress-induced phosphoprotein 1 246 380 - -
Spst2g00393 577 SMART CBM 526 565 IPR006636 -
Spst2g00393 577 SMART CBM 147 186 IPR006636 -
Spst2g00393 577 MobiDBLite consensus disorder prediction 196 255 - -
Spst2g00393 577 Coils Coil 233 253 - -
Spst2g00393 577 Gene3D - 508 577 - -
Spst2g00393 577 FunFam Stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizing) 509 577 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00393 Spst-Chr2 3085913 3089184 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00393 387 483 U-box Gene Family AT3G07370 27.835 1.08e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00393 K09553 - gmx:100816776 996.112