Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00389 ATGATCGATGATTTTACCGCGTTAGATCAGTCTCCTTCGAACACTTCCAGTAGCTACAATTTCACCCCATCAATGGATATTTTGCACATGCGGAGCAAGCGATTTAGCAATCCAAGTGGTGTGGTGTGGTGTGTTGTTACTGGCATGGGGAGGCAACCTTGCTGTGACAAACTTGGAGTGAAGAAAGGTCCATGGACTGCTGAGGAAGACAAAAAACTGATGAACTTTATTCTCACCAATGGCCAGTGCTGTTGGCGTGCTGTTCCCAAGCTTGCTGGCCTTCGTCGTTGTGGTAAGAGTTGTCGTCTTCGTTGGACTAATTATCTCAGGCCTGACCTGAAGAGAGGCCTCCTCACAGAGGCTGAAGAACAGCTTGTGATAGATCTCCATGCCCGTCTTGGCAACAGGTGGTCCAAGATTGCTGCCAGGTTACCAGGAAGAACAGACAACGAGATTAAAAATCACTGGAACACCCACATCAAGAAAAAGCTCCTCAAGATGGGTATCGACCCTGTTACTCATGAACCTCTCAACAAAAAGGTCTCATCCCAGGATAGTTCTTCTCCTGCAGAGCCTTTGCCACAAGTTCATAAAATCCATCAGGTTAAGGAAAATGGTGGGGTTCTCAACTCGGAAGAGAATTCCTCCACATCACCACCTGAAAATTCTTCTGGGGAAGAATCGCTTTTGATGGATAGCATTTGCAGTGATGTGTATCTAATGAACAGCATGTGGCTGGATGAAACTCCTCTTGTGAACACATTATGGGACAGTACACTTAAATTAGAGAATGAAAATAATGGCATGGGCTTGCCAATGTGGGAGGATAACCGTCCTTGGTTGTTGGACTGCCAGGACTTTGGTATTCATGATTTTGGTTTTAACTGTTTCAGCGAGATTGAGTCAAATGCACTTCACACCGTAGGCATGGACAGAAAAGGGCTTTAG 948 0.4568 MIDDFTALDQSPSNTSSSYNFTPSMDILHMRSKRFSNPSGVVWCVVTGMGRQPCCDKLGVKKGPWTAEEDKKLMNFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLTEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLLKMGIDPVTHEPLNKKVSSQDSSSPAEPLPQVHKIHQVKENGGVLNSEENSSTSPPENSSGEESLLMDSICSDVYLMNSMWLDETPLVNTLWDSTLKLENENNGMGLPMWEDNRPWLLDCQDFGIHDFGFNCFSEIESNALHTVGMDRKGL 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00389 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 109 IPR017930 -
Spst2g00389 315 Pfam Myb-like DNA-binding domain 119 159 IPR001005 -
Spst2g00389 315 Pfam Myb-like DNA-binding domain 62 109 IPR001005 -
Spst2g00389 315 CDD SANT 64 109 IPR001005 -
Spst2g00389 315 SMART sant 61 111 IPR001005 -
Spst2g00389 315 SMART sant 114 162 IPR001005 -
Spst2g00389 315 CDD SANT 119 160 IPR001005 -
Spst2g00389 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 110 164 IPR017930 -
Spst2g00389 315 PANTHER F14D16.11-RELATED 49 215 - -
Spst2g00389 315 FunFam MYB transcription factor 59 115 - -
Spst2g00389 315 SUPERFAMILY Homeodomain-like 59 156 IPR009057 -
Spst2g00389 315 MobiDBLite consensus disorder prediction 177 191 - -
Spst2g00389 315 FunFam MYB transcription factor 118 193 - -
Spst2g00389 315 ProSiteProfiles Myb-like domain profile. 57 109 IPR001005 -
Spst2g00389 315 MobiDBLite consensus disorder prediction 207 227 - -
Spst2g00389 315 ProSiteProfiles Myb-like domain profile. 110 160 IPR001005 -
Spst2g00389 315 Gene3D - 119 191 - -
Spst2g00389 315 MobiDBLite consensus disorder prediction 175 194 - -
Spst2g00389 315 Gene3D - 60 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00389 Spst-Chr2 3067224 3069375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00389 49 294 MYB Transcription Factor Family AT4G22680 59.023 1.34e-98 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst2g00389 Myb_DNA-binding 1.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00389 K09422 - gmx:100800360 475.322