Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00373 ATGGATCCTATAACAACACACGCCCATTCTCTTCCACCTCCTTTCCACGCGGCAAGAGATCTCCACCTGCACCACCAACACCAGTTTCACTCCTTACAACAAAACACAGAAGACGAGCAAAGTGGAAGCAGCGGAGGCCTAAACCTCACTCACAAAAGAGAACGTGAAGAAAACACCACCACCAACAGCAACAACAGTGACGGAAAGGAAGGAGGAGGTGGCGGCTCCGGCGAAACCGAGATTTCAAGAAGACCTCGCGGAAGACCCACCGGATCCAAGAACAAGCCCAAACCCCCCATCATCATCACGCGCGACAGCGCCAACGCGCTCAAAACTCACGTTATGGAAGTCGCCGACGGCTGCGACATCGTAGAAAGTGTCTCCACCTTCGCCCGCCGCCGCCAGCGAGGTGTTTGCATCATGAGCGGAACCGGAACCGTCACCAACGTCACCCTACGCCAACCCGCTTCTTCCGGTGCCGTCGTCACGCTCCACGGAAGGTTCGAGATCTTGTCCCTTGCTGGATCTTACCTCCCGCCACCGGCACCGCCAGCAGCCTCCGGATTGACCATATACCTTGCCGGAGGACAAGGGCAGGTGGTTGGAGGAAGCGTGGTTGGCGCACTCATTGCTTCGGGGCCGGTGGTTATCATGTCAGCTTCGTTCAGCAACGCTGCGTATGAGAGACTTCCGTTGGAAGATGAAGACCCATCGATGCCGCTTCAGGGAGGTTCAATTGGGTCACCCGGCGGTGGCGGTGGCGTTGGTCAACCTCAGACACCTCAGCAGCTTATGGGGGATTCCACTGCGCCTCTTTTTCATGGTTTGAATCCGAATCTTCTGAATTCCGTTCAGATGCCTTCGGAAACGTTCTGGGCAACGGGTCGCTCTCCTTACTGA 900 0.5644 MDPITTHAHSLPPPFHAARDLHLHHQHQFHSLQQNTEDEQSGSSGGLNLTHKREREENTTTNSNNSDGKEGGGGGSGETEISRRPRGRPTGSKNKPKPPIIITRDSANALKTHVMEVADGCDIVESVSTFARRRQRGVCIMSGTGTVTNVTLRQPASSGAVVTLHGRFEILSLAGSYLPPPAPPAASGLTIYLAGGQGQVVGGSVVGALIASGPVVIMSASFSNAAYERLPLEDEDPSMPLQGGSIGSPGGGGGVGQPQTPQQLMGDSTAPLFHGLNPNLLNSVQMPSETFWATGRSPY 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00373 299 CDD DUF296 111 178 IPR005175 -
Spst2g00373 299 MobiDBLite consensus disorder prediction 27 101 - -
Spst2g00373 299 Pfam Plants and Prokaryotes Conserved (PCC) domain 111 224 IPR005175 -
Spst2g00373 299 Gene3D - 110 238 - -
Spst2g00373 299 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 45 293 IPR014476 GO:0003680
Spst2g00373 299 MobiDBLite consensus disorder prediction 234 264 - -
Spst2g00373 299 PIRSF ESCAROLA 17 298 IPR014476 GO:0003680
Spst2g00373 299 FunFam AT-hook motif nuclear-localized protein 110 237 - -
Spst2g00373 299 ProSiteProfiles PPC domain profile profile. 107 244 IPR005175 -
Spst2g00373 299 SUPERFAMILY AF0104/ALDC/Ptd012-like 107 236 - -
Spst2g00373 299 MobiDBLite consensus disorder prediction 28 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00373 Spst-Chr2 2908617 2909516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00373 8 299 AT-hook Motif Nuclear Localized (AHL) Family AT2G45430 58.934 3.53e-83 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00373 - - gmx:100781436 445.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g00373 2 2908617 2909516 Spst2g00373 2 2908617 2909516 ECH