Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00344 ATGAACATTTTCAAATCCCCTCCCGACCATGACTCAGAAGCATCATCGGAAACAAGTTCCCTCACAACAGTTCAGAGTAGTGGCTATTCCGACGAGGAGGTGATACTAGCGTCATCCCGGCCAAAGAAGCGAGCAGGGCGAAGAGTGTTCAAGGAGACCAGGCACCCCGTGTACCGGGGAGTGCGACGGAGGAACAACAACAAGTGGGTCTGCGAGATGCGAGTTCCCAACAATAACTCCCGGATTTGGCTCGGGACTTACCCCACCCCCGAAATGGCGGCGCGCGCGCATGATGTTGCCGCCCTCGCTCTCAGGGGGAAGTCCGCCTGCCTCAATTTCGCCGACTCCGTGTGGCGTCTCACGGTGCCTGCCACTAGCGACGCGAAGGAGATACGACGAGCGGCGGTGGAGGCTGCTGAGGCATTTGCAGGGGAGGATGTCAACCAACAGCAGACGAACGAAGAAATTGAAGAGCCTCTGCTGCTGCAGCAACGAGAGGGTGTGTACGGGGATGAAGTCGAAGAGCTTCATGATTTGCTTTTGCGAATTGCGAATGAGCCTTTGATGTCTCCTCCTCCTTGTGCAAGAGATGGTAGGGAGTGGAATGACGTGGAGATGTTCGATGCTGAGGTTCGATTTTTCTCTCTCCGTTTGTTTGAAGGTGAAACGCAAAGCTGTAAAAAAATGAATCCCAAAGACGCGAAAGCGCATAGAAAGAAATTAGCAGTTACTAATTCCTCACCTCCACTGGAATTTCTTAAAAGAACGTGGATATGA 777 0.5277 MNIFKSPPDHDSEASSETSSLTTVQSSGYSDEEVILASSRPKKRAGRRVFKETRHPVYRGVRRRNNNKWVCEMRVPNNNSRIWLGTYPTPEMAARAHDVAALALRGKSACLNFADSVWRLTVPATSDAKEIRRAAVEAAEAFAGEDVNQQQTNEEIEEPLLLQQREGVYGDEVEELHDLLLRIANEPLMSPPPCARDGREWNDVEMFDAEVRFFSLRLFEGETQSCKKMNPKDAKAHRKKLAVTNSSPPLEFLKRTWI 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00344 258 MobiDBLite consensus disorder prediction 13 33 - -
Spst2g00344 258 CDD AP2 58 116 IPR001471 GO:0003700|GO:0006355
Spst2g00344 258 PRINTS Ethylene responsive element binding protein signature 58 69 IPR001471 GO:0003700|GO:0006355
Spst2g00344 258 PRINTS Ethylene responsive element binding protein signature 80 96 IPR001471 GO:0003700|GO:0006355
Spst2g00344 258 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 10 200 IPR045277 GO:0003700
Spst2g00344 258 SUPERFAMILY DNA-binding domain 57 116 IPR016177 GO:0003677
Spst2g00344 258 ProSiteProfiles AP2/ERF domain profile. 57 114 IPR001471 GO:0003700|GO:0006355
Spst2g00344 258 MobiDBLite consensus disorder prediction 1 48 - -
Spst2g00344 258 Gene3D AP2/ERF domain 57 115 IPR036955 GO:0003700|GO:0006355
Spst2g00344 258 Pfam AP2 domain 56 106 IPR001471 GO:0003700|GO:0006355
Spst2g00344 258 SMART rav1_2 57 120 IPR001471 GO:0003700|GO:0006355
Spst2g00344 258 FunFam Ethylene-responsive transcription factor 2 56 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00344 Spst-Chr2 2674194 2677982 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00344 30 192 AP2-EREBP Transcription Factor Family AT1G12610 55.056 3.84e-62 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst2g00344 AP2 8.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00344 - - gmx:100789097 287.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g00344 2 2674194 2677982 Spst2g00344 2 2674194 2677982 ECH
Spst3g04402 3 95603012 95603752 Spst2g00344 2 2674194 2677982 PCT