Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00343 ATGGCTCCGTCACCCTCTTCCAAGAAGCACCCACTCTACCGCGGAATCCGTTCCCGCGGAAGAAAATGGGTCTCCGAAATCCGCGAGCCACGCAAGGCCTCCCGGATATGGCTCGGCACCTTCACCACGCCGGAGATGGCTGCCGCCGCCTACGACGTCGCAGCGTTGGCCTTGAAAGGCGACGGGGCCGTTCTCAACCATCCTCACTCCGTTTCGAAGTATGAAATCCCCGCAACCAACTCTCCTGCGGATATCCGCACTGCTGCCTCCGCTGCAGCCGCAATGATAAAGGCTGAAACTGAAGCTTCCCACAACAATCCATCACCAACTGATAATGCGTCATCTTGGTGGTTTGAAAATGTTTTCGTGGACGAGGAAGCCATTTTCGGCATGCCAAGTTTACTGGTGGACATGGCCGGAGGAATGCTTCTGTCGCCTCCCAGAATGAGCCCGCCACCGTCCGATTACTCGCCGGAGAAGCAAGCTGCAGAAACTTTGTGGAGTTATTTTTGA 513 0.5595 MAPSPSSKKHPLYRGIRSRGRKWVSEIREPRKASRIWLGTFTTPEMAAAAYDVAALALKGDGAVLNHPHSVSKYEIPATNSPADIRTAASAAAAMIKAETEASHNNPSPTDNASSWWFENVFVDEEAIFGMPSLLVDMAGGMLLSPPRMSPPPSDYSPEKQAAETLWSYF 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00343 170 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 8 169 IPR045277 GO:0003700
Spst2g00343 170 SUPERFAMILY DNA-binding domain 12 70 IPR016177 GO:0003677
Spst2g00343 170 ProSiteProfiles AP2/ERF domain profile. 12 68 IPR001471 GO:0003700|GO:0006355
Spst2g00343 170 Pfam AP2 domain 11 60 IPR001471 GO:0003700|GO:0006355
Spst2g00343 170 SMART rav1_2 12 74 IPR001471 GO:0003700|GO:0006355
Spst2g00343 170 CDD AP2 11 70 IPR001471 GO:0003700|GO:0006355
Spst2g00343 170 Gene3D AP2/ERF domain 12 70 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00343 Spst-Chr2 2666226 2666738 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00343 7 169 AP2-EREBP Transcription Factor Family AT5G52020 53.179 3.60e-44 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Spst2g00343 AP2 9.2e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00343 - - gmx:100811020 248.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g00343 2 2666226 2666738 Spst2g00343 2 2666226 2666738 ECH
Spst3g04404 3 95623872 95624411 Spst2g00343 2 2666226 2666738 PCT