Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00330 ATGGCCACGGCAAGGTCCCCGAGCCCTTCCTCCGAGGACATCCTCGACTCGACGCCGCTGTTGGCCAATTCCGGCGGCTCCTCAGACGAGCTCACCTCCGGGCGCCGATTCGCGAGGCGGCAGCGGCTCCGGCAGGCGGCACGGTTCCTCCGGCAGGCGAGCGGGCGCAGGATGATGCGCGAACCGTCGATGCTGGTCCGTGAGGCGGCGGCGGAGCAATTGGAGGAAAGGCAGAGCGATTGGGCGTATTCGAAGCCGGTGGTTGTTCTGGACATCGTTTGGAACTTCGCTTTCGTGGTTGTGGCGGGGACCGTGTTGATTTTGAGCGAGGGGGAAGCGCCGGGGATGCCTCTGAGGTTGTGGATTGTGGGGTATGCTATGCAATGCGTCCTTCACATGGTTTGCGTTTGCGTGGAGTATAGGAGAAGGAGGAGGCAGCAACGCGCCACGGCGTCGGTTACAGCGCAGGATAGGGTTGCGAATAGCAGTGGGAATTTGAGTTCGTCTTCGAGGGAAGGTTCTGCTTCTGGCTCTGTGCAGTATGTGTCGTTGGGGCAACTCGATGAGGAGGGTACTAGTGTTGCAAAGCATTTGGAATCAGCCAATACAATGTTTTCATTTGTTTGGTGGATTATTGGATTTTACTGGGTATCAGCCGGTGGTCAAGATTTAGCCCAAGATTCTCCCCAGCTTTACTGGCTATGCATAATCTTTCTGGGTTTTGATGTTTTCTTTGTCGTTTTCTGTGTTGCACTGGCGTGTATCATTGGTATTGCTGTTTGCTGTTGCCTTCCATGTATCATTGCACTTCTTTACGCAGTTGCAGATCAGGAAGGAGCATCAAAGGAAGACATTGACCAGTTGTCAAAATTTAAATTCCGGAGAATTGAAAGCAATGAGAAACATACCGGTACTATACAAGGACATGTTGGAGGAATAATGACTGAATGCCTGGCTGAGTCACCCATCGAACATGTTCTTGCTGAGGAGGATGCGGAATGTTGCATCTGCCTTTCTTCTTATGACGATGGGGTTGAGTTAAGAGAACTTCCTTGTGGTCACCATTTTCACTGTGTCTGTGTGGATAAATGGCTGTATATTAATGCCACTTGCCCCCTCTGCAAGTATAACATCTTAAAAAATAGCAACCTCAGTCAAGAGGAAGTGTAG 1170 0.5145 MATARSPSPSSEDILDSTPLLANSGGSSDELTSGRRFARRQRLRQAARFLRQASGRRMMREPSMLVREAAAEQLEERQSDWAYSKPVVVLDIVWNFAFVVVAGTVLILSEGEAPGMPLRLWIVGYAMQCVLHMVCVCVEYRRRRRQQRATASVTAQDRVANSSGNLSSSSREGSASGSVQYVSLGQLDEEGTSVAKHLESANTMFSFVWWIIGFYWVSAGGQDLAQDSPQLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIALLYAVADQEGASKEDIDQLSKFKFRRIESNEKHTGTIQGHVGGIMTECLAESPIEHVLAEEDAECCICLSSYDDGVELRELPCGHHFHCVCVDKWLYINATCPLCKYNILKNSNLSQEEV 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00330 389 MobiDBLite consensus disorder prediction 1 31 - -
Spst2g00330 389 SMART ring_2 334 374 IPR001841 -
Spst2g00330 389 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 319 381 IPR013083 -
Spst2g00330 389 PANTHER TARGET OF ERK KINASE MPK-1 53 381 - -
Spst2g00330 389 MobiDBLite consensus disorder prediction 151 175 - -
Spst2g00330 389 FunFam E3 ubiquitin-protein ligase At1g12760 320 385 - -
Spst2g00330 389 ProSiteProfiles Zinc finger RING-type profile. 334 375 IPR001841 -
Spst2g00330 389 MobiDBLite consensus disorder prediction 1 34 - -
Spst2g00330 389 SUPERFAMILY RING/U-box 323 381 - -
Spst2g00330 389 Pfam Ring finger domain 333 375 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00330 Spst-Chr2 2562426 2567848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00330 1 382 C3H Transcription Factor Family AT1G68070 48.831 1.96e-117 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00330 - - gmx:100790497 653.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04419 3 95734773 95738699 Spst2g00330 2 2562426 2567848 PCT