Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00328 ATGATGGTGCCGTTACCTGCGGAGCAAACCGGTGAATCAGCGCCGGCGGAATCGCAGAGATCCATTCCGACGCCTTTTCTGACGAAGACGTACCAGCTCGTGGATGATCCCTCTGCTGATGACCTAATTTCCTGGAACGAAGATGGCACGAGTTTCATCGTTTGGCGGCCTGCTGAATTTGCACGGGATTTGCTTCCAAAGTACTTCAAACACAACAACTTTTCCAGTTTTGTCCGTCAGCTAAACACATATGGATTTCGGAAGGTTGTCCCCGATCGTTGGGAGTTCGCTAACGACTGTTTCCGGCGAGGTGAGAGAACTTTACTTCGCGACATACAACGCCGGAAAATATTGCCGGTGCCGCCAACGGCGGCACCGGCAGTAGTCACTGCCAATACTGTAACGGTGGCTGTGGCGGCACCGGCGATCAGAACGGTATCTCCGACGACTTCCGGTGACGAACAGGTACTATCCTCGAACTCATCTCCGATTGCTGGAAATATTAATAATACAGTGCACCGCACCACGAGTTGCACCACTGCGCCCGAGCTGTTAGAAGAAAATGAAAGGCTTAGAAAAGAGAACATGCAACTGAATCACGAGTTGAGTCAATTGAAGAGTTTGTGTAATAACATACTCGCTTTGATGACCAATTACGCTTCTGGTTTTAGCCGTCAGCAGTTAGAATCGTCCACGAGTGCTGTGAGGACCGTGCCGCTGCCGGAAGGGAAGGCGCTGGAGCTTTTGCCTGGTAAGTATGTTTTGTCGGCTGAGGACGCCGTGCATGTCGGTGGCGCTGCCGGATCAGCGCCGTGTACGACGGCGAACGCGGCGGAGACAGAGGTTCCCAAGCTGTTTGGGGTTTCGATTGGATTGAAAAGGTGTAGGACAGAGTGCGAGGCCGAACCGGAGGGAGAAGAACAGAATCAAATGCAAACGCGAGCACAGATGCAGGCACAAACACAATCGTCGCAAGAACCAGATGGCGGGCCTGATGTGAAATCTGAACCGCTTGATGGGGATGAGTCGGATGATCAGGATCCTCGTTGGCTGGAGCTTGGGAAATGA 1068 0.5253 MMVPLPAEQTGESAPAESQRSIPTPFLTKTYQLVDDPSADDLISWNEDGTSFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANDCFRRGERTLLRDIQRRKILPVPPTAAPAVVTANTVTVAVAAPAIRTVSPTTSGDEQVLSSNSSPIAGNINNTVHRTTSCTTAPELLEENERLRKENMQLNHELSQLKSLCNNILALMTNYASGFSRQQLESSTSAVRTVPLPEGKALELLPGKYVLSAEDAVHVGGAAGSAPCTTANAAETEVPKLFGVSIGLKRCRTECEAEPEGEEQNQMQTRAQMQAQTQSSQEPDGGPDVKSEPLDGDESDDQDPRWLELGK 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00328 355 Coils Coil 181 208 - -
Spst2g00328 355 MobiDBLite consensus disorder prediction 1 21 - -
Spst2g00328 355 Gene3D - 18 116 IPR036388 -
Spst2g00328 355 FunFam Heat stress transcription factor B-4 18 116 - -
Spst2g00328 355 Pfam HSF-type DNA-binding 26 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst2g00328 355 MobiDBLite consensus disorder prediction 306 329 - -
Spst2g00328 355 SMART hsfneu3 22 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst2g00328 355 ProSitePatterns HSF-type DNA-binding domain signature. 65 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst2g00328 355 MobiDBLite consensus disorder prediction 301 355 - -
Spst2g00328 355 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 15 318 IPR027725 -
Spst2g00328 355 SUPERFAMILY "Winged helix" DNA-binding domain 23 115 IPR036390 -
Spst2g00328 355 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst2g00328 355 PRINTS Heat shock factor (HSF) domain signature 26 49 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst2g00328 355 PRINTS Heat shock factor (HSF) domain signature 77 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00328 Spst-Chr2 2549037 2550195 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00328 17 355 HSF AT4G11660 51.268 5.24e-100 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Spst2g00328 HSF_DNA-bind 1.1e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00328 K09419 - gmx:100791020 568.155