Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00308 ATGATTCCGGAACTTGACTCCCATCTTGCTATCTATGTGCTTGAATGTCTGGAGCTTCTTGGCTTTAGATCCTCTTCTCTCTTATTTGATTTAGGGTTTGCACCAGTGAAAGGATTTGGGGTTGAGGAGAAGAAGTTATCATTTTTCGCGATTGACAAACCTGTTGGTAAATGCATGGATGGACGAGAAGGTATGGCTTTTCCTGGCGGCTCTGCTCCATACTACATGCAGCATAGAGGAGGAGGGGTTAGCGCATCTGGTCCTGGAACTGGAACACCCTCTGGGTTCCAACCACCCTCTGGGTTCAGAGCTTTGTCAAATGTCTCTTCAGGTTCTACATTTTCCGTAGAGGCTGAACCTCAGCCTCAGCCTCTGTCGCAGTCTCAGCCTCAGCGTGGTGGTTTTGGTCACGGAATTAACCTAGGTTCCTCACCTGATGGTGGAGGTGGAATGCCTTCTTCCGGTGAGCCTTTGAAAAAGAAAAGAGGGAGGCCAAGGAAGTATGGTCCTGAGAGTGGGACTGTTTCCCTGCGACTCTCTCCCTTGTCTGCCACTGCTAATTCCACCCCTGGATCGGGCACTCCTGCCGAGAAACGGCCCAGAGGGCGCCCACCTGGAAGTGGAAGGAAGCAACAGCTTGCTACCCTAGGTGAATGGATGAACAGTTCTGCAGGATTGGCCTTTTCACCTCATGTTATCACTGTTGGAGTTGGGGAGGACATTGTAGCAAAGTTATTCTCATTTTCACAGCAGAGACCAAGGGCATTATGCATCTTAACTGGAACTGGGACTGTTTCTTCTGTCAGTCTGCGCCACCCAGCTTCTACTAACGTCAGTGTTTCTTATGAGGGCCGGTTTCAAATATTATGCTTGTCTGGTTCTTACTTGGTTGCTGAAGAAGGTGGACCACGCAGTAGAATAGGTGGCATGAGTGTCTCCCTTTCTAGTCCTGATGGTCACATTATTGGTGGTGGTGTTGCTAGCCTTATAGCTGCAAGCCCAGTGCAGGTGGTTGTATGCAGTTTTGTATATGGAACCTCTAAGCCAAAGACTAAACAAGTGACCACTACTGCTATAAAAGACAGCAGTTCTGAACCTCAGAGTAGTGACAAGTTAGCTTCTCCAGCCAGTGCTCCTCCTAATCAAAACTACACGTCTTCTTCTCCTGCCACAGGCATTTGGCCTGCTTCATCAAGGCCTTTGGAGGTGAAAAGTGCACATCCACACACTGGTATTGACTTGACGCGTGGTTGA 1254 0.4888 MIPELDSHLAIYVLECLELLGFRSSSLLFDLGFAPVKGFGVEEKKLSFFAIDKPVGKCMDGREGMAFPGGSAPYYMQHRGGGVSASGPGTGTPSGFQPPSGFRALSNVSSGSTFSVEAEPQPQPLSQSQPQRGGFGHGINLGSSPDGGGGMPSSGEPLKKKRGRPRKYGPESGTVSLRLSPLSATANSTPGSGTPAEKRPRGRPPGSGRKQQLATLGEWMNSSAGLAFSPHVITVGVGEDIVAKLFSFSQQRPRALCILTGTGTVSSVSLRHPASTNVSVSYEGRFQILCLSGSYLVAEEGGPRSRIGGMSVSLSSPDGHIIGGGVASLIAASPVQVVVCSFVYGTSKPKTKQVTTTAIKDSSSEPQSSDKLASPASAPPNQNYTSSSPATGIWPASSRPLEVKSAHPHTGIDLTRG 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00308 417 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 122 387 IPR039605 GO:0003680
Spst2g00308 417 MobiDBLite consensus disorder prediction 353 394 - -
Spst2g00308 417 Gene3D - 230 361 - -
Spst2g00308 417 MobiDBLite consensus disorder prediction 87 134 - -
Spst2g00308 417 ProSiteProfiles PPC domain profile profile. 222 363 IPR005175 -
Spst2g00308 417 MobiDBLite consensus disorder prediction 353 417 - -
Spst2g00308 417 MobiDBLite consensus disorder prediction 78 211 - -
Spst2g00308 417 Pfam Plants and Prokaryotes Conserved (PCC) domain 230 343 IPR005175 -
Spst2g00308 417 CDD DUF296 230 342 IPR005175 -
Spst2g00308 417 MobiDBLite consensus disorder prediction 176 194 - -
Spst2g00308 417 SUPERFAMILY AF0104/ALDC/Ptd012-like 227 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00308 Spst-Chr2 2385110 2388868 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00308 59 417 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 49.347 6.65e-97 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00308 - - gmx:100790569 556.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g00308 2 2385110 2388868 Spst3g01109 3 14512836 14515908 PCT