Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00298 ATGTTGTCAATCTGTGATAGCATTCCCTCATTTGCCGCATTCCCTCTGCAGAACACAACATTAATTGCGGTGGAGGGACTAACAAAAACTTCAAGCTTTGGTACTTGTACACCGACACTTCCTTATGTTCCTCTCCGTTACAAAAGTCTAGGTGCCCCTCAAACTCCAACTGTAGCTCCAGAAACAGTTTATAGCAATGGGACCTCAGCTCGGAAAGAGAGGCAGAAGAAATCGAAAATTGAACTTCAAAAGTTGAGTGGATCTTCCATTTCAAATGGAGAATCTTTCACTTCAGTGGAACAGGAGGATATATGCAAAATTTGTTATGACGGGTATGATGCAGATGAGCCAAAAATCTATAGAAATTGTCACCATCATTTTCACCGTAGATGCATTCGTTTATGGATGTCAAAGAAGAGAGCTTGTCCTGTGTGTACTCAGGAAGCGATTATCAACTCAGCTGCTTTAAAGATACCAACTACTTAG 486 0.4115 MLSICDSIPSFAAFPLQNTTLIAVEGLTKTSSFGTCTPTLPYVPLRYKSLGAPQTPTVAPETVYSNGTSARKERQKKSKIELQKLSGSSISNGESFTSVEQEDICKICYDGYDADEPKIYRNCHHHFHRRCIRLWMSKKRACPVCTQEAIINSAALKIPTT 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00298 161 ProSiteProfiles Zinc finger RING-type profile. 105 146 IPR001841 -
Spst2g00298 161 SMART ring_2 105 145 IPR001841 -
Spst2g00298 161 Pfam Ring finger domain 104 145 IPR001841 -
Spst2g00298 161 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 150 IPR013083 -
Spst2g00298 161 SUPERFAMILY RING/U-box 99 151 - -
Spst2g00298 161 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 54 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00298 Spst-Chr2 2284343 2285044 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00298 68 153 C3H Transcription Factor Family AT5G41350 37.079 4.77e-16 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00298 - - jre:109002054 77.7962