Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00297 ATGGGATTTCCAGTGGGGTACTCAGAGTTGGTGCTACCCAAGGTGCTTGTGCAGCTGCTATCCGTATTGGGCTTCATCAGGAAACTCGTCACCCTCCTCTTGTGCTACGTGGGCTTCAACGATTTCTTCGAACCCGACATTGCGTGGCCGGAGAGGGTGCCCGAATTGCAGTCGGTCTCGGCGGTGCTGATCCGGGAAATCCTGCCGGTGGTGAAGTTCTCGGAGATGGTGGGGGCGGAGGCGGCGGAGAGTTGCGCGGTGTGTCTGTACGAGTTCGAGGGAGAGGACAAGATCAGACGGCTAACAAACTGCCGGCACATATTCCACAGAGGGTGTCTGGACCGTTGGATGGGGTACGATCAAAGAACGTGCCCCCTCTGTCGGACACCCTTCATACCCCACCATATGCAAGCTGCCTTCAATGATAGACTATGGGCTGCTTCAGGGCTCCCTCAATTCCATTACTACGATGAATGA 477 0.5597 MGFPVGYSELVLPKVLVQLLSVLGFIRKLVTLLLCYVGFNDFFEPDIAWPERVPELQSVSAVLIREILPVVKFSEMVGAEAAESCAVCLYEFEGEDKIRRLTNCRHIFHRGCLDRWMGYDQRTCPLCRTPFIPHHMQAAFNDRLWAASGLPQFHYYDE 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00297 158 PANTHER RING ZINC FINGER PROTEIN-RELATED 22 148 - -
Spst2g00297 158 SMART ring_2 85 127 IPR001841 -
Spst2g00297 158 CDD RING-H2_RHA1-like 85 131 - -
Spst2g00297 158 FunFam RING-H2 finger protein ATL73 64 135 - -
Spst2g00297 158 Pfam Ring finger domain 84 128 IPR001841 -
Spst2g00297 158 SUPERFAMILY RING/U-box 84 134 - -
Spst2g00297 158 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 135 IPR013083 -
Spst2g00297 158 ProSiteProfiles Zinc finger RING-type profile. 85 128 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00297 Spst-Chr2 2271411 2271887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00297 1 158 C3H Transcription Factor Family AT1G63840 57.317 1.53e-62 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00297 K16281 - gmx:102665617 286.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g00297 2 2271411 2271887 Spst2g00297 2 2271411 2271887 ECH