Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00294 ATGGCTCGACAACTGTGTGAAGACAAATCATCGTCTGGATTTTGCTACTCTGATGTATCATCGGGAAATCCAACGATGCTAGTGAACCAGATCCAAGGCTTTGTGTCAGACCCGGAGATGTACAACCTCACCACAGGCATGGAAATGATAGGGTTTCCAAAGAGTGACACCAACGCTGTCATGTGGAGAAGTTTCATCCCCAAATCGGGTCCTTCCTCTTCCAAGACCATCGACTCCTCCACCACTTTCTACCACCATGACTACAATAACAACAAGCCTTCGGATTTCACACCCGGGAATATTTCTGAAACAAGTGCAGAGAATCTAATCGTGGGAGCTCATGATTCGGCCCCGTGGCAAGACGACAACAACCATAACAGGTTTGATGATTCTTCTTTAAGGTGTGTGTTCCCTTGTGAAGCCAACGAAAGGCCTAGTCAAGGCCTTTCACTATCTCTCAGCTCAACCAACCCTTCCACTATCGGGTTGCAATCTTTTGAGCTACGACAAACAAGCCATAGTCCTGATTTTGTTCACTCGAGTTCCAGAGAAGGGTTCTTTGGAAAACCAGTGAGTGTCCAACAGCAACCAATGTTACAAGATGGGTATGTGAGTTCTAACTCCAAAGCTGCCAGTGTTTACCAACAAGGACATTTCCTGGTGAAGAACTCCAAGTATTTGGTGCCTGCACAGGACCTTCTCAACGAGTTTTGTAGCCTAGACGCAAAGCAAAGCGAGTTGGGTAAGCCTAAATCGTTGAAGAAGCAGTGGGAAGAGGATAACAACGGTACCGGTTCCTCGAAGAAGCATTCTCTGACCTCCCTCGAGTTCGTGGAGTTGCAGAAGAGAAAGACAAAGCTGCTTTCGATGCTGGAAGAGGTTGACAGAAGGTACAAGCACTACCGCAATCAGATGAAGAGCGTGGTGTCGTCGTTTGAAGCGGTGGCGGGGAACGGTGCTGCCACGGTGTACTCGGCGTTGGCGCTGAAAGCCATGTCGAGACATTTCAAGTGTCTGAAGGATGGGATTTTGGGGCAGATTCAAGCAACAAGAAAAGCCATGGGAGAGAAAGACCCAGTTGCACCAGGCACGACAAGGGGTGAAACGCCTAGGCTCAAAGTCATCGACCAAGCACTGAGACAACAAAGGGCGTTTCAGCAAATGAGCATGATGGAAACACATCCTTGGAGACCCCAACGTGGCCTTCCCGAGCGTGCTGTTTCGGTTCTTCGGGCTTGGCTTTTTGAGCATTTTCTCCATCCGTACCCAAGCGATGTTGATAAACATATTTTAGCACGCCAAACCGGTCTCTCGAGAGGCCAGGTTTCGAATTGGTTTATTAATGCAAGGGTGAGACTATGGAAGCCAATGGTGGAGGAAATGTACTTGGAGGAAGTGAAGGATCACGAAAACAACGTAGCTTCGTCCGAGGGCGCCACTGATCCAGACAATGATATAAACCCAAATGTTCAGAACCCTCCACCTCATTCATCACGATCAGAGGATCAGAAGCCATCTCTGGTTCGAATCGACTCCGAGTGTGCGTCCTCCATAATCAATAACCACACCCCAGATAACAAAAAGGACCCAAAAGGCCAAGAACAGTGCTTTGGGTCGGTGGAGCTTGATTTTTCATCATACACACACCACTCCTCGGGCATGGTTTCTTTCGGAAGTAATGATCAAAGTGGGAACAACCAGAGCGGGGTGTCTTTGACGCTAGGGTTACAGCAGCATGGAGTAAGCCTAGCGTTCTCGCCAGCAACACAAACTTCACTGTATTACCCAAACGCAAGGGACCAAATTGACGACTGCCAACCCGTTCAGTACTCTCTTTTGGATGGTGAAGGACAAAACCTGCCTTACAGAAATTTGATGGGAGCACAGCTTCTCCATGATTTGGCCGGATAG 1911 0.4846 MARQLCEDKSSSGFCYSDVSSGNPTMLVNQIQGFVSDPEMYNLTTGMEMIGFPKSDTNAVMWRSFIPKSGPSSSKTIDSSTTFYHHDYNNNKPSDFTPGNISETSAENLIVGAHDSAPWQDDNNHNRFDDSSLRCVFPCEANERPSQGLSLSLSSTNPSTIGLQSFELRQTSHSPDFVHSSSREGFFGKPVSVQQQPMLQDGYVSSNSKAASVYQQGHFLVKNSKYLVPAQDLLNEFCSLDAKQSELGKPKSLKKQWEEDNNGTGSSKKHSLTSLEFVELQKRKTKLLSMLEEVDRRYKHYRNQMKSVVSSFEAVAGNGAATVYSALALKAMSRHFKCLKDGILGQIQATRKAMGEKDPVAPGTTRGETPRLKVIDQALRQQRAFQQMSMMETHPWRPQRGLPERAVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRGQVSNWFINARVRLWKPMVEEMYLEEVKDHENNVASSEGATDPDNDINPNVQNPPPHSSRSEDQKPSLVRIDSECASSIINNHTPDNKKDPKGQEQCFGSVELDFSSYTHHSSGMVSFGSNDQSGNNQSGVSLTLGLQQHGVSLAFSPATQTSLYYPNARDQIDDCQPVQYSLLDGEGQNLPYRNLMGAQLLHDLAG 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00294 636 MobiDBLite consensus disorder prediction 475 501 - -
Spst2g00294 636 Pfam Associated with HOX 221 343 IPR006563 -
Spst2g00294 636 FunFam BEL1-like homeodomain protein 4 399 461 - -
Spst2g00294 636 Pfam Homeobox KN domain 413 452 IPR008422 GO:0003677|GO:0006355
Spst2g00294 636 SMART HOX_1 396 460 IPR001356 GO:0003677
Spst2g00294 636 SMART prehox3 215 345 IPR006563 -
Spst2g00294 636 MobiDBLite consensus disorder prediction 470 507 - -
Spst2g00294 636 MobiDBLite consensus disorder prediction 249 265 - -
Spst2g00294 636 MobiDBLite consensus disorder prediction 249 270 - -
Spst2g00294 636 Gene3D - 399 461 - -
Spst2g00294 636 ProSiteProfiles 'Homeobox' domain profile. 393 456 IPR001356 GO:0003677
Spst2g00294 636 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 154 481 - -
Spst2g00294 636 SUPERFAMILY Homeodomain-like 397 463 IPR009057 -
Spst2g00294 636 CDD homeodomain 396 457 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00294 Spst-Chr2 2248958 2252019 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00294 137 635 Homeobox Transcription Factor Family AT5G41410 48.624 2.98e-139 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Spst2g00294 POX 1.9e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00294 - - gmx:100803088 1145.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g00294 2 2248958 2252019 Spst2g00294 2 2248958 2252019 ECH
Spst3g04536 3 97063176 97073295 Spst2g00294 2 2248958 2252019 PCT