Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00271 ATGCACATGGTGGAAGCAATGGATGAGGGAAAACATAAATCCAGGAAAGAAAACCATGAGGTGAAAGATGGGGATTCTAAGAGGAGTCACCGTGACCGTGATAGAATTGGAGAAAGGGGCAAGGATAAAAATGATGGGAGGCACAGGGATAGGGAGAAGAGGGATCGGGAGTCCCGGAGACATGAAAGAGAGAGGAGTACTGACTCTGAAGACAAGTATGATAGAGATAGGGATAAGCGCAGAGATAAAGATAAGGATGTGGACAGAGAAAGAGGTCGAGAGAAGAAAAGGGAAAGGGACAGGGATAGGGAAGACAGGGAGAGGACAGACAGAGTAAGGGAAAAAGAAAAAGAGAGGGAAAGAAAAGAGGATAAGGAGAGGATTAGAGAAAGGGAAAGGAGGGATCATGAGAGAGAGAAGGAAAGAGAAAGAGAAAGGGGGAGGAGAGCACGAGAGAGGGAGAAACGGAGGGAAGTTGATAGTGATTACAGTGATGGTGAATCTAGGGAGAGGGATAGAAAGCGGCATAGGAAAGAGGATGGTGATTACAAGAAGAGAGAGAGGGAAAGGAGTGTCAGCAAGCCAAGCAGGCAATCTGAGGAACATGAAGGAAGCCCAAGAAAAAAGAGTGTCGGAGATGATTCAGATACCAAAGATGGTGAGAGAAAACCTACCCGCGAAGAGGAGATGGAAAATGAACAAAAGAGGTTGGATGAGGAAATGGAAAAACGGAGGAGGAGAGTTCAAGAGTGGCAAGAACTAAGGAGGAAGAAAGAAGAAGCAGAAAGAGAAAAGCATGGTGAAGTAAGTGCTAATGAACCTGAGTCTGGAAAGACCTGGACGCTAGAAGGGGAATCTGATGATGAAGAAGGACCAGGTACTGGGAAGCATGATACTGGTATGGATGTAGATGCAGATGAAAAACCTGCTGATGTGGAACCCAAGGATGCGATGGTGGTAGACACTGATAATGAGACAATTGCATCTGATTTACAGGATGGAACTGCTGGTACGCCTGAAGATGAGGAAATAGATCCATTGGATGCTTTCATGAATTCTATGGTTCTACCTGAAGTTGAAAAGCTGAACAATGCTGTGACATCCGTAATTTCTGATAAAGCCATTGACATAAAAGCGAAAGATAAAGGGTATGAGCAAAGTCGTGGTGCACAGTCAAGGAAAGCTTCAACTATTGGCAGAATAATTCCTGGTGAAGAGACTGACTCAGATTATGCAGATGATGAAGTTGAGAGGGATCCACTGGATGAAGATGATGATGAGTTCATGAAAAGAGTGAAGAAAACAAAAGCCGAGAAGCTTTCTTTAGTTGATCACTCAAAGATCGACTATGAACCATTCAAGAAAACTTTTTATATTGAAGTGAAAGAGATCTCAAAGATGACTCCCGAAGAAGCAGCAGTATACAGGAAGCAGTTGGAATTGAAAATACATGGAAAGGATGTGCCAAAGCCTATTAAATCATGGCACCAGACTGGACTTGCTAGCAAAATTTTGGAGTCAATAAAGAAGATGAACTTTGAAAAGCCGATGCCTATTCAAGCTCAGGCACTCCCTGTAATCATGAGTGGCCGAGATTGTATAGGGATTGCTAAAACTGGGTCGGGCAAAACACTTGCCTTTGTTCTGCCAATGCTGAGGCATATCAAGGATCAGCCACCAGTTGTTGCCGGAGATGGACCAATTGGACTTATTATGGCCCCTACAAGGGAACTTGTTCAACAGATTCACAGTGATATAAAAAAATTTGCTAAGGTACTCGGTCTCAGGTGTGTGCCTGTGTATGGAGGCTCTGGTGTTGCTCAACAAATTAGTGAGTTGAAACGTGGTACTGAGATTGTGGTTTGTACTCCAGGTAGGATGATTGACATACTATGCACTAGTAGTGGAAAAATAACTAACTTGCGGAGAGTCACCTATCTGGTCATGGATGAAGCTGATAGAATGTTTGACATGGGCTTTGAACCTCAAATTACACGAATTGTTCAGAATATTCGGCCAGATCGGCAAACAGTTCTTTTCTCTGCAACCTTCCCCCGTCAGGTTGAAATTCTGGCCCGAAAGGTTTTGAATAAACCTGTTGAAATACAAGTTGGCGGGAGGAGTGTTGTGAACAAAGACATATTACAGCTAGTTGAAGTGAGGCCTGATAATGAAAGGTTCCTTAGACTTTTAGAAATATTAGGGGAATGGTACGAGAAAGGAAAGATTCTGATATTTGTTCACTCCCAGGAGAAATGTGATAGTTTGTTCAAGGATCTGCTCAGGCATGGTTATCCATGCCTTTCTCTTCATGGCGCTAAGGACCAGACAGACAGGGAATCCACAATATCTGATTTTAAAAGCAATGTCTGCAATTTGTTGGTTGCAACAAGTATTGCTGCCAGAGGATTGGATGTTAAGGAACTAGAATTGGTGATCAATTTTGATGTTCCTAACCACTATGAAGATTATGTACACCGTGTTGGGCGCACTGGACGAGCTGGCCGAAAGGGTTGTGCCATTACATTTATATCTGAGGAAGAGGCAAGATATGCACCTGATCTGCTGAAAGCCTTGGAACTATCTGAGCAGACTGTTCCCGATGATCTGAAAACTCTTGCTGATAGCTTTATGGCAAAAGTGAATCAAGGACTGGAGCAAGCCCATGGGACTGGTTATGGAGGCAGTGGCTTTAAATTTAATGAAGAGGAAGATGAGGTGAGGAGAGCAGCAAAGAAAGCACAAGCCAAGGAATACGGGTTTGAAGAAGACAAGTCCGATTCTGAAGATGAAGATGAAGGTATTCGGAAGGCAGGAGGTGATATCTCACAGCATCCTGCTTTTGCTCAGATTCTTGCTGCCACTAAAGTTAATGCTCCTGCATTGCCTACTCCCATATCTGCCGCCCAGCTGATTTCGAATGGTGGACTACCTTCTTTTCCATCTGTTCTTGGTCTCCAGACCCCAACAGTCTTGCCTGGGTCAGGGCTACCCCTTGCTGCAAATGATGGGGCAGCTCGAGCAGCACTGGCTGCTATGAACTTGCATCGCAACATAGAAAAAATACAATCAGAAGCATTACCAGAGCATTATGAGGCTGAGTTGGAAATAAATGATTTCCCCCAGAATGCTCGCTGGAAAGTTACGCATAAGGAAACATTAGGCCCTATATCTGATTGGACTGGAGCCGCCATTACTACCAGGGGGCAGTTCTTCCCACCTGGCAAAATCCCAGGACCTGGGGAACGCAAACTCTACTTGTTCATTGAAGGTCCTACTGAGCAGTCTGTTAAGACAGCTAAAGCACAATTGAAGCGTGTTTTGGAAGACATTACAAATCAGGCTTTGCAACTTCCTGGTGGAAATCAACCGGGCAAATACTCTGTTGTGTGA 3393 0.4421 MHMVEAMDEGKHKSRKENHEVKDGDSKRSHRDRDRIGERGKDKNDGRHRDREKRDRESRRHERERSTDSEDKYDRDRDKRRDKDKDVDRERGREKKRERDRDREDRERTDRVREKEKERERKEDKERIRERERRDHEREKERERERGRRAREREKRREVDSDYSDGESRERDRKRHRKEDGDYKKRERERSVSKPSRQSEEHEGSPRKKSVGDDSDTKDGERKPTREEEMENEQKRLDEEMEKRRRRVQEWQELRRKKEEAEREKHGEVSANEPESGKTWTLEGESDDEEGPGTGKHDTGMDVDADEKPADVEPKDAMVVDTDNETIASDLQDGTAGTPEDEEIDPLDAFMNSMVLPEVEKLNNAVTSVISDKAIDIKAKDKGYEQSRGAQSRKASTIGRIIPGEETDSDYADDEVERDPLDEDDDEFMKRVKKTKAEKLSLVDHSKIDYEPFKKTFYIEVKEISKMTPEEAAVYRKQLELKIHGKDVPKPIKSWHQTGLASKILESIKKMNFEKPMPIQAQALPVIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHSDIKKFAKVLGLRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDILQLVEVRPDNERFLRLLEILGEWYEKGKILIFVHSQEKCDSLFKDLLRHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLVATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEEARYAPDLLKALELSEQTVPDDLKTLADSFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEVRRAAKKAQAKEYGFEEDKSDSEDEDEGIRKAGGDISQHPAFAQILAATKVNAPALPTPISAAQLISNGGLPSFPSVLGLQTPTVLPGSGLPLAANDGAARAALAAMNLHRNIEKIQSEALPEHYEAELEINDFPQNARWKVTHKETLGPISDWTGAAITTRGQFFPPGKIPGPGERKLYLFIEGPTEQSVKTAKAQLKRVLEDITNQALQLPGGNQPGKYSVV 1130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00271 1130 PANTHER RNA HELICASE 439 913 - -
Spst2g00271 1130 MobiDBLite consensus disorder prediction 280 320 - -
Spst2g00271 1130 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 640 875 IPR027417 -
Spst2g00271 1130 Pfam DEAD/DEAH box helicase 518 689 IPR011545 GO:0003676|GO:0005524
Spst2g00271 1130 SMART ultradead3 512 717 IPR014001 -
Spst2g00271 1130 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 730 874 IPR001650 -
Spst2g00271 1130 MobiDBLite consensus disorder prediction 909 923 - -
Spst2g00271 1130 Coils Coil 227 264 - -
Spst2g00271 1130 FunFam probable ATP-dependent RNA helicase DDX17 455 705 - -
Spst2g00271 1130 MobiDBLite consensus disorder prediction 1 344 - -
Spst2g00271 1130 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 476 704 IPR027417 -
Spst2g00271 1130 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 648 656 IPR000629 -
Spst2g00271 1130 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 524 702 IPR014001 -
Spst2g00271 1130 Gene3D - 445 702 IPR027417 -
Spst2g00271 1130 MobiDBLite consensus disorder prediction 408 423 - -
Spst2g00271 1130 CDD SF2_C_DEAD 714 844 - -
Spst2g00271 1130 CDD DEADc_DDX46 482 703 - -
Spst2g00271 1130 MobiDBLite consensus disorder prediction 909 940 - -
Spst2g00271 1130 Gene3D - 703 877 IPR027417 -
Spst2g00271 1130 Pfam Helicase conserved C-terminal domain 727 835 IPR001650 -
Spst2g00271 1130 MobiDBLite consensus disorder prediction 1 272 - -
Spst2g00271 1130 SMART helicmild6 754 835 IPR001650 -
Spst2g00271 1130 MobiDBLite consensus disorder prediction 382 423 - -
Spst2g00271 1130 CDD KH-I_AtRH42_like 1028 1129 - -
Spst2g00271 1130 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 493 521 IPR014014 GO:0003724
Spst2g00271 1130 Coils Coil 112 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00271 Spst-Chr2 2042883 2046455 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00271 480 855 Eukaryotic Initiation Factors Gene Family AT3G19760 32.105 1.06e-57 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00271 K12811 - gmx:100806467 1712.97