Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00257 ATGACTGCGCCACCGACCAAGTACACTCACCACACCAAACTACTCACACTCACACACCCACCAAAACACCCCTATCCCAGACTCGTCAGAATAACAGTCACAGACACTGACGCCACAGACTCCTCAAGCGACGAAGAACAGACCTTACACTCTTCAACGCGCCACCGACTTCGACACAGGAAATTTATCAACGAGATTTCCATCGAGTCCTGCGCCAGCGAGAACCACGGCGTCGTTTCGAGGAAGAGAGTTCGAAGCAGGAACGTAGTGGGCAAAGGCAGGGTAGCAAAGAGTCAGCGCGTGTCGAACGGCAAGAAATTCCGCGGAGTCAGACAAAGGCCGTGGGGAAAATGGGCGGCTGAGATACGAGACCCGTCGCGACGTGTACGGTTGTGGTTGGGTACCTACGACACTGCCGAGGAAGCTGCCTTGGTGTACGATAACGCAGCCATTAAGCTGCGTGGACCAGACGCGCTCACCAATTTCAAAACGCTACCTGCCACGTGGCACACCGAAGACCTGACGCCGGTGGCCAACGGTTACGCCTCCGTTGAGGAAACTCAGAACAAAAACTTATTTTCTCCCACTTCCGTGCTCCACTCTTGTTCCTTGTCCGAGGAGGCTGAATCCATAACCGGCAAAGACGATGATTACTCCTGCGTGTCCGAGAGTTTTATGGCCAAAGCTGAGTCACCGTTTCCGATTCCGAGCGAAATACAATTTGACTTCCGAGGCTGTTCGCCGGCACCGGATGTGTTCGGCGAGTTGGATAGCGCGGCGGCGCTGGAGAGTGTATTGTTCTCGGACGACGATTGGCCTGGTGTGTTCCTCACTTCTTGTGAGGATTTCGGTTTGAAAAGTTGGAATACTGACAGAAATCGCGACTTTTTCCAAGATATCGACGATTTGTTTGTCTCCGATCCCCGTCTTGCTCTCTGA 939 0.5335 MTAPPTKYTHHTKLLTLTHPPKHPYPRLVRITVTDTDATDSSSDEEQTLHSSTRHRLRHRKFINEISIESCASENHGVVSRKRVRSRNVVGKGRVAKSQRVSNGKKFRGVRQRPWGKWAAEIRDPSRRVRLWLGTYDTAEEAALVYDNAAIKLRGPDALTNFKTLPATWHTEDLTPVANGYASVEETQNKNLFSPTSVLHSCSLSEEAESITGKDDDYSCVSESFMAKAESPFPIPSEIQFDFRGCSPAPDVFGELDSAAALESVLFSDDDWPGVFLTSCEDFGLKSWNTDRNRDFFQDIDDLFVSDPRLAL 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00257 312 PRINTS Ethylene responsive element binding protein signature 129 145 IPR001471 GO:0003700|GO:0006355
Spst2g00257 312 PRINTS Ethylene responsive element binding protein signature 107 118 IPR001471 GO:0003700|GO:0006355
Spst2g00257 312 ProSiteProfiles AP2/ERF domain profile. 106 163 IPR001471 GO:0003700|GO:0006355
Spst2g00257 312 CDD AP2 105 162 IPR001471 GO:0003700|GO:0006355
Spst2g00257 312 Pfam AP2 domain 106 155 IPR001471 GO:0003700|GO:0006355
Spst2g00257 312 SMART rav1_2 106 169 IPR001471 GO:0003700|GO:0006355
Spst2g00257 312 FunFam Ethylene-responsive transcription factor 2 105 164 - -
Spst2g00257 312 Gene3D AP2/ERF domain 105 164 IPR036955 GO:0003700|GO:0006355
Spst2g00257 312 SUPERFAMILY DNA-binding domain 106 163 IPR016177 GO:0003677
Spst2g00257 312 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 26 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00257 Spst-Chr2 1971702 1972640 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00257 1 312 AP2-EREBP Transcription Factor Family AT4G23750 39.718 1.37e-50 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst2g00257 AP2 2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00257 - - vra:106777252 467.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g00257 2 1971702 1972640 Spst2g00257 2 1971702 1972640 ECH
Spst2g00257 2 1971702 1972640 Spst3g01032 3 13659244 13660188 PCT