Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00243 ATGTCCACCACCGCAACCACAACTTCAGAAGAAGTGAGCAGCAACGAGTGGGAAGTGATACACATGAGCGAGCAAGAGGAGGACCTGATTCACAGGATGTACAAGCTAGTCGGAGACAAGTGGAATTTGATAGCGGGTCGCATTCCGGGTCGTAAAGCAGAAGAAATAGAGAGATACTGGATCATGAGACACACTCACGCTTTCTCTGTTACAACAAATCAAAGTAAAGCCAAAACCTCTTAG 243 0.465 MSTTATTTSEEVSSNEWEVIHMSEQEEDLIHRMYKLVGDKWNLIAGRIPGRKAEEIERYWIMRHTHAFSVTTNQSKAKTS 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00243 80 Gene3D - 22 80 - -
Spst2g00243 80 SUPERFAMILY Homeodomain-like 23 61 IPR009057 -
Spst2g00243 80 Pfam Myb-like DNA-binding domain 23 61 IPR001005 -
Spst2g00243 80 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 21 64 - -
Spst2g00243 80 SMART sant 18 66 IPR001005 -
Spst2g00243 80 FunFam MYB-like transcription factor 21 63 - -
Spst2g00243 80 CDD SANT 22 60 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00243 Spst-Chr2 1897668 1899503 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00243 22 60 MYB Transcription Factor Family AT5G52600 61.538 2.68e-13 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Spst2g00243 Myb_DNA-binding 2.6e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00243 K09422 - gmx:100814431 129.798