Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00231 ATGCTGGAATTGCTGAATCGGGTAGCGTTGAAGCTGCGGAAAAATCGTACCGCGATGGTGGACGAAGAGAAGGAGGAGAAAGAGGTACTTTGGAGTAAGAAGGTGCAGAGCCAAAAGGAATACGTGCGTTTTGAGAGTTATGAGATGAGAGAGGGGGTTTGGGCTTTTATATTGGGTATTGTAGATTCTTGCCTGTGCCTTGTTGCAATGTTGTGTCTGGTAGTGTTGCTTGTGTTTCTTCCCCCTCTCAGAGGGGAACCAATGTGCGAGACCATGTCATGCGGTAAAATCAAAATTCAGTTTCCATTTGGTTTGAAACAAACTCGAATTCAATCTGAAAGTTCTGGTCGGTGTAGCCATCCGAGATTCCAACTTTCCTGCGACAACCGGAACAGAACCATTCTGAGCCTCGCAGGTTCGGGGGATTTGGTGGTGAAAAGCATAAACTACAGGGCCCAAACCGTTAAGGTGAACGACCCCGAAGGTTGTCTCCCGAGACGTTTTATGCACAATTTGAGCCTTTCCCTGCATCCACCGTTTACGTTTGACGCAACTCTTTACGACCTAACTTTCCTTCGTTGTCCTTCCAACATAACGCACTCCATTCCATTCCCACCAATTTCATGCCTCCAGACCAACTCCTCCTCGGTGACATTCTCCTGGTGGCTTCTTAATGACACATCACCGTGGCGTGATGAGTGTGAGGTGATATCGTCGGCTTTTGTTCCAATTCCAAATCCAGACAGTACGTCGTTTTTTACGCCCGATCTCAACCAGGATGTCGTGTTGAAGTGGAACGAGCCCGCGTGTGGGGATTGTGCTGGTCGTGGCCAGGTATGTGGGTATATCGGTGACACCAAAACTTTCCAAGTTGGATGTTTCTTCCCTGCTCCTGACCAAATCCAAGGTCTTTCAAGAAGCGCCAAATATGGCTTAACGATCGGAGTGGGAATACCTGGACTCCTATGTTTAACTGGGCTTTGCTGCTTTATATGTAGTAAATTCGATGTGTACACACATGGTCACCGGGCCAGGCCCAGCACGGAGCTTCCGAACTCAATTGCAACCGTTCCACGCTCCTTGTTAATAACGGGCCTTAATGGGCCGGAAATTGAAAAACTCCCCAAGACTCTTATTGGTGACAGTGGGCGCATACCGAATTCGAACGATAACACGTGTCCAATATGTCTCTCAGAATACGAGCCCAAAGAGACTCTGAGAACCATACCTACGTGCAACCATTATTTTCATGCACACTGCATAGACGAGTGGCTGAAGATGAATGCCACGTGTCCATTATGCAGAAATCCACCGGATTCTTCTTCTAACGTTACCCCTTATTCTTACTCTTCAGCATCATCTATCAATTCACCTTTGCCATAG 1383 0.4751 MLELLNRVALKLRKNRTAMVDEEKEEKEVLWSKKVQSQKEYVRFESYEMREGVWAFILGIVDSCLCLVAMLCLVVLLVFLPPLRGEPMCETMSCGKIKIQFPFGLKQTRIQSESSGRCSHPRFQLSCDNRNRTILSLAGSGDLVVKSINYRAQTVKVNDPEGCLPRRFMHNLSLSLHPPFTFDATLYDLTFLRCPSNITHSIPFPPISCLQTNSSSVTFSWWLLNDTSPWRDECEVISSAFVPIPNPDSTSFFTPDLNQDVVLKWNEPACGDCAGRGQVCGYIGDTKTFQVGCFFPAPDQIQGLSRSAKYGLTIGVGIPGLLCLTGLCCFICSKFDVYTHGHRARPSTELPNSIATVPRSLLITGLNGPEIEKLPKTLIGDSGRIPNSNDNTCPICLSEYEPKETLRTIPTCNHYFHAHCIDEWLKMNATCPLCRNPPDSSSNVTPYSYSSASSINSPLP 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00231 460 ProSiteProfiles Zinc finger RING-type profile. 393 435 IPR001841 -
Spst2g00231 460 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 70 438 IPR046948 -
Spst2g00231 460 SUPERFAMILY RING/U-box 387 447 - -
Spst2g00231 460 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 363 439 IPR013083 -
Spst2g00231 460 MobiDBLite consensus disorder prediction 441 460 - -
Spst2g00231 460 Pfam Ring finger domain 391 435 IPR001841 -
Spst2g00231 460 Pfam Wall-associated receptor kinase galacturonan-binding 89 159 IPR025287 GO:0030247
Spst2g00231 460 SMART ring_2 393 434 IPR001841 -
Spst2g00231 460 CDD RING-H2_EL5-like 393 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00231 Spst-Chr2 1770863 1776562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00231 88 438 C3H Transcription Factor Family AT2G46495 34.254 2.57e-51 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00231 - - ahf:112732430 356.681