Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00213 ATGCAAGGTGGCGCAGCTGAAGGGGAAGCCTTGGATTTCGAGCCTGAGGACGATGACTTGATGGACGAGGACGGCGCTCCCGACGCGGACGCTTCTCCGCCTCACCCTAAGCTCAAATCCGCCATCACCGCTGCCGCTTCCTCTCTCTCCGCTCCTAAGAAGACCAAGGGTCGTGGGTTCCGTCAGGACACCGACACCAACCGCACCACTCGCCTATCTGGCTCTGACTTCGACTCTCTCACCACCGAGGGCGGCCCTGGCCCTCAGAGATCCATTGAAGGATGGATCATTCTGGTCACCGGCGTGCACGAGGAAGCGCAGGAGGATGATTTGCAAAACGCTTTTGGTGAATACGGGGAGATTAAGAACCTGCATTTGAACCTCGATCGCCGCACTGGTTTTGTCAAAGGTTATGCACTGATTGAATATGAGCGCGCAGAAGAAGCTCGGAATGCAATAGAGAATTTGAATGGATCTGAGCTTCTCACCCAAACCATTTATGTTGACTGGGCCTTCAGCAGTGGACCTATTAACGAGTCAATCAGAAGAAAGAATGTTAGACCACCTCGCGAACGTCGCTCCAGGAGTCCCCGGAGGAGATATTGA 606 0.5429 MQGGAAEGEALDFEPEDDDLMDEDGAPDADASPPHPKLKSAITAAASSLSAPKKTKGRGFRQDTDTNRTTRLSGSDFDSLTTEGGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEARNAIENLNGSELLTQTIYVDWAFSSGPINESIRRKNVRPPRERRSRSPRRRY 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00213 201 PANTHER RNA-BINDING PROTEIN 8A 7 200 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Spst2g00213 201 CDD RRM_RBM8 89 176 IPR033744 GO:0003729
Spst2g00213 201 FunFam RNA-binding protein 8A-like 28 192 - -
Spst2g00213 201 MobiDBLite consensus disorder prediction 1 91 - -
Spst2g00213 201 SMART rrm1_1 96 169 IPR000504 GO:0003723
Spst2g00213 201 Gene3D - 21 197 IPR012677 -
Spst2g00213 201 MobiDBLite consensus disorder prediction 10 26 - -
Spst2g00213 201 PRINTS RNA binding motif protein 8 family signature 86 100 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Spst2g00213 201 PRINTS RNA binding motif protein 8 family signature 49 61 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Spst2g00213 201 PRINTS RNA binding motif protein 8 family signature 160 172 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Spst2g00213 201 PRINTS RNA binding motif protein 8 family signature 142 158 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Spst2g00213 201 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 173 IPR000504 GO:0003723
Spst2g00213 201 MobiDBLite consensus disorder prediction 181 201 - -
Spst2g00213 201 MobiDBLite consensus disorder prediction 187 201 - -
Spst2g00213 201 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 166 IPR000504 GO:0003723
Spst2g00213 201 SUPERFAMILY RNA-binding domain, RBD 88 198 IPR035979 GO:0003676
Spst2g00213 201 MobiDBLite consensus disorder prediction 66 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00213 Spst-Chr2 1623375 1625946 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00213 97 171 Eukaryotic Initiation Factors Gene Family AT3G11400 29.333 9.85e-09 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00213 K12876 - gmx:100778595 326.25