Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00210 ATGTTCGTCTTTGTTCTCAATAATAAAGGGTACCCAATACAAGTTTTCACGGTAAATGGCTACTTGATTAGAGGAATTAGAAGGGTGGGAGCTTCCGGGTTCCCAAGAAAATACAAGTGTACCCAGTCGCTTAACAACGATAGCAAGTTTGACAAGAGCAAGAATGGTTTGGTGCCCCGAGTGGTTAATTCATCATCACAAGCGATTACAGGGACTGCCAAAGTGGCATCAGAGGACAAAAGCAACCACTTAGATGCCACAAAAAGCCAGCACCAGAGTTGCATCACAGTGGGTAGTGGTGTAGATGACAAACTGCCCATGATGAGCAGAATACTCAGCGTGCAACATATTGCAGGAAAGCAAGTTGATTTCGGATGGCCACTGTGGTTATCTTCAGCGGCTCCAGAAGCCATCAAAGGGTGGGTGCCTCGACGGGCAGACTCTTTTGAAAAATTAGACCAAATTGGACAAGGGGCTTATAGCAGTGTGCATAAAGCTCGTGACCTTGAGACTGGTAAAATAGTGGCTTTGAAGAAGGTTCGCTTCTCCAGTGCAGATGTAGAAAGTGTTCGGTTCATGGCAAGGGAAATCTATATTTTGCGTCAACTTGACCATCCTAATGTCATGAAGCTCGAGGGTCTTGTCACGTCAAGAACGTCCACCAGTTTGTACCTTGTATTTGAATACATGGAGCATGACCTTGCCGGGCTATCAACTTTTCATGGCTTGAAGTTAACTGAACCACAGCAACTGCTTCGTGGGCTTGAACATTGCCACAGTCGGGGTGTGCTGCACCGTGACATCAAGGGCTCAAATCTTCTGATTGACGACAAAGGAAATCTTAAAATTGGAGATTTTGGTCTTGCAACAGTCTATGATCCTGAAAAAAAGCAGCCATTGACTAGCCGTGTTGTGACTCTATGGTATAGGGCACCTGAGCTTTTGCTAGGTGCTACAGATTATGGAGCTGCAATTGACTTGTGGAGTGTTGGTTGCATTCTAGCTGAAATGCTAGTGGGGAAGCCGATCATGCCTGGAAGAACAGAGGTGGAACAAACACACAAAATTTTTAAACTTTGTGGTTCGCCATCTGAAGACTACTGGCGGGGAACAAAATTTCCTCATGCAACAAGCTTTAAGCCACAACAACCTTACAACCGCCAAGTTTCAGAAACATTTAAAAAATTTTCTTCCTCGGCATTGGCTCTTGTTGATAGGCTCCTATCACTAGAACCAGAAAATCGAGGATCAGCAACTTCCGCACTGCAGAGTGAGTTCTTCACTACCAACCCCTTACCTTGTGATCCCTCAAGTTTACCAAAGTTTTCACCAAGCAAGGAGTTTGATATCAAGCGTCGAGCAAAGGAAGCTACAAGGAAAAACTTGGAAGCTGTTAAAGGACGTGCACCAGCATCTGTTTTAAGGGGACCAGGAAATACCAAGGGACTGGGTTCACCAGAGTATTACCCTCAAGGAAATATATCTATGCGGGACAAACCAAATAGTAGAATGCCCCATCATAAATATCAAACCCAGGAGGATGGGGAATCCAACGAGAAGGGTGAAGGAAACAGCGTAAGTATACACGGTGGCTACAAGCATTCTGTTTCAATGATGCACTGCAGTGTAGCACGATCATCCACAGTGAGTAAGAGACTAGAGTCTTTGAAGAATCAGAGGTCTCATTTGAATCAGGAAACAACAGATTTATGTACCTCTTTCGTGAAAAAGGAACCAGACTCGTCTGCGCTTGAATCCGCCACGGATCATATGCCGAAGAAAAATAGGATACACTGCTCTGGACCATTGATGCCACCGGGTAGCAACATTGATGACATGCTTCGAGAGCATGAGAAATTAATGCAAGATGTTTTCCGTAGTGTCAAAAAGACCAGTCTGTAA 1902 0.4469 MFVFVLNNKGYPIQVFTVNGYLIRGIRRVGASGFPRKYKCTQSLNNDSKFDKSKNGLVPRVVNSSSQAITGTAKVASEDKSNHLDATKSQHQSCITVGSGVDDKLPMMSRILSVQHIAGKQVDFGWPLWLSSAAPEAIKGWVPRRADSFEKLDQIGQGAYSSVHKARDLETGKIVALKKVRFSSADVESVRFMAREIYILRQLDHPNVMKLEGLVTSRTSTSLYLVFEYMEHDLAGLSTFHGLKLTEPQQLLRGLEHCHSRGVLHRDIKGSNLLIDDKGNLKIGDFGLATVYDPEKKQPLTSRVVTLWYRAPELLLGATDYGAAIDLWSVGCILAEMLVGKPIMPGRTEVEQTHKIFKLCGSPSEDYWRGTKFPHATSFKPQQPYNRQVSETFKKFSSSALALVDRLLSLEPENRGSATSALQSEFFTTNPLPCDPSSLPKFSPSKEFDIKRRAKEATRKNLEAVKGRAPASVLRGPGNTKGLGSPEYYPQGNISMRDKPNSRMPHHKYQTQEDGESNEKGEGNSVSIHGGYKHSVSMMHCSVARSSTVSKRLESLKNQRSHLNQETTDLCTSFVKKEPDSSALESATDHMPKKNRIHCSGPLMPPGSNIDDMLREHEKLMQDVFRSVKKTSL 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00210 633 ProSitePatterns Serine/Threonine protein kinases active-site signature. 263 275 IPR008271 GO:0004672|GO:0006468
Spst2g00210 633 ProSitePatterns Protein kinases ATP-binding region signature. 155 178 IPR017441 GO:0005524
Spst2g00210 633 FunFam probable serine/threonine-protein kinase At1g54610 136 231 - -
Spst2g00210 633 ProSiteProfiles Protein kinase domain profile. 149 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst2g00210 633 CDD STKc_CDK9_like 149 427 - -
Spst2g00210 633 MobiDBLite consensus disorder prediction 500 520 - -
Spst2g00210 633 Coils Coil 546 566 - -
Spst2g00210 633 SUPERFAMILY Protein kinase-like (PK-like) 142 435 IPR011009 -
Spst2g00210 633 Gene3D Phosphorylase Kinase; domain 1 144 242 - -
Spst2g00210 633 FunFam probable serine/threonine-protein kinase At1g54610 232 467 - -
Spst2g00210 633 Gene3D Transferase(Phosphotransferase) domain 1 245 467 - -
Spst2g00210 633 Pfam Protein kinase domain 149 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst2g00210 633 SMART serkin_6 149 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst2g00210 633 PANTHER CELL DIVISION PROTEIN KINASE 147 433 - -
Spst2g00210 633 MobiDBLite consensus disorder prediction 464 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00210 Spst-Chr2 1594671 1598869 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00210 141 466 Core Cell Cycle Gene Families AT5G10270 50.720 1.30e-112 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Spst2g00210 Pkinase 1.1e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00210 K08819 - gmx:100791743 870.152