Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00197 ATGGATCAAGAACCAACAAGCACCATGCAACGATGTGTCGTGGCCCCAGCAGCATCGTATCGTGGTGTTCGACAACGAAAATGGGGGAAATGGGTGTCGGAAATTCGTGAGCCGGGGAAGAAGAGCAGAATATGGTTAGGGAGCTACGAGTCACCGGAGATGGCAGCAGCAGCCTATGACGTGGCAGCGTTGCACCTCAGAGGACGCGCCGCCAGGCTCAATTTTCCTGAACTGGCGGAGACACTGCCACGTCCCGCCAGCTCGAAACCCGAGGATGTACAGGTGGCAGCACAGCAAGCGGCATTGAAGTTCACTGTGTCACCATCAGTGTCACGTAATGAAATATGTAGTATGAATGAAAGTGGTAGCAATGGTGGTAATAGTGTGAGTAAGAGTAGTGGTGTGGTTCCTGTGAGAGTGGGACTTTCGGCTACACAAATCCAAGCTATCAATGAGTCTCCGTTGGACTCACCAAAGATGTGGATGATGCAGATGGCAGAGACAATTAGGTTTGGGTTTGGTGATGAGTATTCTGCGATGATGCTGTCTTGTGATGATGATGATGATTATGCTATGGAGTTGAGTGGATGGGAAGAAATGCATCATGAATCATTGTGGGACTCTCCTGAATATATGTGA 639 0.4945 MDQEPTSTMQRCVVAPAASYRGVRQRKWGKWVSEIREPGKKSRIWLGSYESPEMAAAAYDVAALHLRGRAARLNFPELAETLPRPASSKPEDVQVAAQQAALKFTVSPSVSRNEICSMNESGSNGGNSVSKSSGVVPVRVGLSATQIQAINESPLDSPKMWMMQMAETIRFGFGDEYSAMMLSCDDDDDYAMELSGWEEMHHESLWDSPEYM 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00197 212 CDD AP2 20 78 IPR001471 GO:0003700|GO:0006355
Spst2g00197 212 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 18 167 - -
Spst2g00197 212 Gene3D AP2/ERF domain 19 77 IPR036955 GO:0003700|GO:0006355
Spst2g00197 212 SUPERFAMILY DNA-binding domain 20 77 IPR016177 GO:0003677
Spst2g00197 212 ProSiteProfiles AP2/ERF domain profile. 19 76 IPR001471 GO:0003700|GO:0006355
Spst2g00197 212 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700|GO:0006355
Spst2g00197 212 PRINTS Ethylene responsive element binding protein signature 58 78 IPR001471 GO:0003700|GO:0006355
Spst2g00197 212 FunFam Ethylene-responsive transcription factor 2 18 77 - -
Spst2g00197 212 Pfam AP2 domain 20 68 IPR001471 GO:0003700|GO:0006355
Spst2g00197 212 SMART rav1_2 19 82 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00197 Spst-Chr2 1513525 1514163 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00197 18 207 AP2-EREBP Transcription Factor Family AT1G71450 47.917 8.15e-52 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst2g00197 AP2 7.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00197 - - vra:106777427 347.436