Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00166 ATGGGCACAAAAACTCGGAAATCTTGTGCCAGAGCGAAAAGGAAGAACTTCGGAAGGAGGTACCGACGATTGTTTTTGCCGTTTCAACTCAGACCCTTGAATCCCAACCGAGAAGAAATCATGAAGCTGAAAACATACGCTGGTCTTAGTTTCATTGCAACTCTGGCTATCATATATCATGCATTCAACAGTAGGGGTCAGTTTTATCCGGCAATGGTGTATCTCTCAACTTCCAAGATCAGCTTGGTGCTTCTTCTCAACATGGGTTTGGTCTTTATGTGTATTCTATGGCAATTAACCAAGAAGATTTTCTTGGGTTCTCTCCGGGAGGCGGAGGTTGAGAGGCTCAACGAGCAATCGTGGAGGGAGGTCATGGAAATCCTCTTTGCAATCACCATTTTTAGGCAGGACTTCTCCGTCACATTCCTTGCAATGGTCACAACTCTGTTGCTGATTAAGGCTTTGCACTGGCTGGGTCAAAAGAGAGTTGAGTACATCGAGACCACTCCTTCAGTGCCCATGTTGTCCCATGTTCGAATTGTATCTTTTATGGGGTTCCTTCTTCTCTTAGATAGCATTTTCTTATACAGTTCTTTGAAGCATTTGATAGAAACTTGGCAGGCTTCGGTTTCACTGTTCTTTTGTTTCGAGTACATGATACTCGCAACCACCACCGTATCAATTTTTGTAAAATATATTTTCTATGTCAGTGACATGCTTATGGATGGACAATGGGAAAAGAAACCGGTCTTCACTTTTTACCTGGAACTTATTAGGGACTTGCTTCACTTGTCGATGTATATGTGCTTCTTTCTTGTGATTTTTGTAAACTATGGCATTCCCTTGCACCTTATACGGGAGCTGTACGAGACATTTAGGAACTTCAAAGTCCGTGTTGCAGATTACATACGTTATCGAAAAATCACTTCAAATATGAATGATCGATTTCCAGATGCAACCCCTGAAGAGCTTAATGCAAGTGATGCAACCTGCATTATATGTCGTGAAGAGATGACTACAGCCAAGAAACTCATATGTGGACATCTTTTTCATGTTCATTGTCTCCGATCATGGCTGGAGCGGCAGCATACTTGCCCCACCTGCAGAGCCTTGGTTGTACCACCAGAAAATGGGACAACTGCAGCTGTAGGGCAGCAAGGATCACAGGCAGATGGTCAACGGCAGGGAACCGGGACTGGCAGTGGAAGCACAGCTCAAAATGAGGCTACTGATAACATGAGTCGACATCAAGCCAGACTCCAAGCCGCTGCTGCTGCAGCTTCTATATATGAGAAGTCTTATGTGTACCCTTCTGCAAATTCTTTTGTATGCTCTCCTGGGCACACTCTTCATCCTCCGGTGGCTGAATCTACTAATACAGACAACAGTGGAGAGCAAACTTCCTGTGAACCAACACAAAGGCAGTTTCTTACCGCTGGTGGACCAACATATGTATCCTTTCCTCCAATGCAACACTTCCATTTTCTACCTTCCCAACCACATGCAGCACCTGTGAATTATGGAAAGGGGTTTGAAAATGATCCAAATATCCCAAGCTCTCAGCTGGAAGTTCATAGAAAACTCCTTCAATTGCAGATTGAGATTCTGCAAAACCAGCTTGAGATTCTGCAGAGGACAAAGGCTGATAAAATTGTAGATGAGGGTACATCATCATCAGATAGCAGAGGCAAGAGTATCATGTGCTCATCGGGATTTCGTCATGGTTATATTGAGGACATTCATGATGGAAAACCATGA 1758 0.438 MGTKTRKSCARAKRKNFGRRYRRLFLPFQLRPLNPNREEIMKLKTYAGLSFIATLAIIYHAFNSRGQFYPAMVYLSTSKISLVLLLNMGLVFMCILWQLTKKIFLGSLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLAMVTTLLLIKALHWLGQKRVEYIETTPSVPMLSHVRIVSFMGFLLLLDSIFLYSSLKHLIETWQASVSLFFCFEYMILATTTVSIFVKYIFYVSDMLMDGQWEKKPVFTFYLELIRDLLHLSMYMCFFLVIFVNYGIPLHLIRELYETFRNFKVRVADYIRYRKITSNMNDRFPDATPEELNASDATCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGTTAAVGQQGSQADGQRQGTGTGSGSTAQNEATDNMSRHQARLQAAAAAASIYEKSYVYPSANSFVCSPGHTLHPPVAESTNTDNSGEQTSCEPTQRQFLTAGGPTYVSFPPMQHFHFLPSQPHAAPVNYGKGFENDPNIPSSQLEVHRKLLQLQIEILQNQLEILQRTKADKIVDEGTSSSDSRGKSIMCSSGFRHGYIEDIHDGKP 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00166 585 Pfam Ring finger domain 330 369 IPR001841 -
Spst2g00166 585 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 303 376 IPR013083 -
Spst2g00166 585 FunFam ERAD-associated E3 ubiquitin-protein ligase HRD1A 303 378 - -
Spst2g00166 585 PANTHER RING ZINC FINGER PROTEIN 27 557 - -
Spst2g00166 585 Coils Coil 519 553 - -
Spst2g00166 585 CDD RING-H2_synoviolin 328 369 - -
Spst2g00166 585 MobiDBLite consensus disorder prediction 379 417 - -
Spst2g00166 585 SUPERFAMILY RING/U-box 311 375 - -
Spst2g00166 585 ProSiteProfiles Zinc finger RING-type profile. 331 369 IPR001841 -
Spst2g00166 585 SMART ring_2 331 368 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00166 Spst-Chr2 1290053 1296854 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00166 40 566 C3H Transcription Factor Family AT3G16090 65.725 0.0 678
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00166 K10601 - gmx:100816441 946.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g00166 2 1290053 1296854 Spst2g00166 2 1290053 1296854 ECH