Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00162 ATGGGAATACAACCCCAGCAAACATTTCGGGAGGAAGAGGAGGAGGAGCTTCCAGGCCGTGGAACTACGATCTCAGGTCAATCAATGTCAACTAGCAGAAGTGTTGGGTCACCGTCCAGCCGGAGTGAGCAGACAATGGCAACACCAGCTAGTGATAACACCTTTCTTAGGTTAAATCATCTTGACATACATGGTGATGATGCTGGATCACAGGGCGCAGTTGCTAGCAAGAAGAAAAAGAGAGGCCAACGCGCTGTTGGTGGTGATAAGAGTGGAAGAGGTCTCCGCCAATTTAGTATGAAAGTCTGCGAGAAGGTAGAAAGCAAGGGAAGAACAACTTACAATGAGGTAGCTGATGAACTTGTAGCTGAATTTGCTGATCCAAGCAATGGTGTTTCAACTCCTGATCAGCAACAATATGACGAGAAAAACATTCGTCGAAGGGTGTATGATGCTTTGAATGTTCTCATGGCAATGGATATTATTTCTAAGGATAAAAAGGAAATACAATGGAAGGGTCTTCCTCGCACAAGTCTAAGCGATATTGAGGAGCTAAAGACAGAGCGTATGGGGCTAAGGAATAGAATTGAAAAGAAAGCGGCCTATTTGCAAGAGCTGGAAGAACAATACATAGGTCTTCAGAAACTTATACAACGAAATGAGCAATTATATAGCTCCGGGAATGCTCCCAATGGGGGTGTATCTTTACCTTTCATTCTGGTGCAGACACGTCCTCATGCAACTGTTGAAGTGGAAATATCAGAAGATATGCAGCTTGTGCATTTTGATTTCAATAGCACCCCCTTTGAGCTGCATGATGATAACTATGTTCTCAAGGCAATGAAATTTTGTGAGAGATCTCAGAATGATAACACACCAGACAATCCTACGGATGGCGGTGAAGGTTCTAGCATGTCAAGCTTGTATCATGCACAGGTTCCTACTTCAGCTTCAAACCTTCCAACTAGACCTCCTTCATCTCCACCACTCCCTGGAATATTGAAGGCAAGAGTTAAGAACGAGCATTGA 1029 0.4393 MGIQPQQTFREEEEEELPGRGTTISGQSMSTSRSVGSPSSRSEQTMATPASDNTFLRLNHLDIHGDDAGSQGAVASKKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNGVSTPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLSDIEELKTERMGLRNRIEKKAAYLQELEEQYIGLQKLIQRNEQLYSSGNAPNGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCERSQNDNTPDNPTDGGEGSSMSSLYHAQVPTSASNLPTRPPSSPPLPGILKARVKNEH 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00162 342 PANTHER TRANSCRIPTION FACTOR DP 22 316 IPR015648 GO:0005667|GO:0051726
Spst2g00162 342 FunFam Transcription factor-like protein DPB 85 178 - -
Spst2g00162 342 SUPERFAMILY "Winged helix" DNA-binding domain 93 174 IPR036390 -
Spst2g00162 342 Gene3D - 85 178 IPR036388 -
Spst2g00162 342 Pfam E2F/DP family winged-helix DNA-binding domain 93 173 IPR003316 GO:0005667|GO:0006355
Spst2g00162 342 Coils Coil 189 223 - -
Spst2g00162 342 PIRSF Txn_factor_DP 4 342 IPR015648 GO:0005667|GO:0051726
Spst2g00162 342 SMART DP_2 180 340 IPR014889 -
Spst2g00162 342 MobiDBLite consensus disorder prediction 1 93 - -
Spst2g00162 342 Pfam Transcription factor DP 181 312 IPR014889 -
Spst2g00162 342 SMART E2F_TDP_2 90 173 IPR003316 GO:0005667|GO:0006355
Spst2g00162 342 SUPERFAMILY E2F-DP heterodimerization region 180 295 IPR037241 -
Spst2g00162 342 MobiDBLite consensus disorder prediction 287 342 - -
Spst2g00162 342 MobiDBLite consensus disorder prediction 287 320 - -
Spst2g00162 342 MobiDBLite consensus disorder prediction 21 55 - -
Spst2g00162 342 FunFam Transcription factor-like protein DPB 179 303 - -
Spst2g00162 342 CDD DP_DD 178 281 IPR014889 -
Spst2g00162 342 Gene3D Transcription factor DP 179 301 IPR038168 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00162 Spst-Chr2 1266406 1271121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00162 91 289 E2F-DP Transcription Factor Family AT5G02470 55.500 9.29e-79 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Spst2g00162 DP 2.5e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00162 K04683 - gmx:100781272 596.66