Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00159 ATGCTCATCACCGTAGCTCCTTCTGTCGATGAGGTCCCTGCACCCAAAACAGACCAAAATCAGAATCCCCAAACTACCCATATCTTCAAATCAAAATTGCCAGACATACCAATCTCCAACCACCTACCTCTCCATGCCTACTGCTTCCAGAACCTCTCCCAGTTCGCCGACCGACCATGCCTCATCGTTGGCAGTGCTGCCAAAACCTACACCTACGCCGAGACGCATCTCCTTTCGCGCAAGATCGCCGCCGGATTCTCCAACCTCGGAATCCGCAAGGGCGACGTCGTCATGATCCTCCTCCAGAACTCAGCTGAGTTTGTCCTCTCCTTCCTCGCCGCCTCCATGATCGGTGCTGTCGCCACCACCGCCAACCCGTTCTACACCGCCGCCGAGATCTTCAAGCAGTTCACCGCCTCCAAGGCCAAGCTGATCGTAACTCAGGCAATGTATGTCGACAAGCTCCGCCACCACGGCGACGGCGCAAACCTCAGCGAGGATTTCAAGGTCGTGACCGTCGATGATCCGCCGGAGAATTGTCTCCACTTCTCGGTTCTCTCGGAGGCGAACGAGAACGATATGCCGGAGGTGGAGATCCACCCGGACGATGCCGTGGCGCTGCCGTTCTCCTCCGGTACCACGGGGTTACCGAAAGGAGTGATTCTGACGCACAAGAGTTTAACCACGAGCGTGGCGCAGCAGGTGGATGGAGAGAACCCTAACCTGTATCTCACTACCGAGGACGTGCTTCTCTGCGTGCTTCCGCTGTTTCACATATTCTCGCTCAACAGTGTGCTGTTATGCGCGCTAAGGGCCGGGAGTGCCGTTTTGCTGATGCAAAAGTTCGAGATTGGGACGCTGCTGGAGCTGACACAGCGCTACCGCGTGTCTGTGGCGATGGTTGTGCCGCCGCTGGTGCTGGCGCTGGCAAAGAATCCAATGGTGGCGGATTTTGACCTGAGTTCAATACGGTTAGTTCTCTCCGGTGCTGCTCCCTTGGGAAAGGAACTCGAAGAGGCTCTCCACAACAGGGTGCCTCATGCTGTTTTGGGACAGGGGTACGGGATGACAGAAGCAGGTCCAGTGCTGTCCATGTGCTTGGGCTTTGCAAAGCAACCATTCCCAACAAAATCGGGATCTTGTGGAACTGTTGTAAGAAATGCAGAACTCAAGGTTGTTGACCCTGAAACTGGTCGTTCTCTTGGCTACAACCAACCCGGTGAAATTTGCATCCGAGGGCTACAGATCATGAAAGGATATCTGAACGATGACAAAGCCACAGCATCGACCATCGATGCAGAAGGTTGGCTTCACACCGGTGATGTTGGCTATGTAGATGATGATGATGAAATTTTCATTGTTGACAGGGTGAAAGAACTCATTAAATTTAAAGGCTTCCAGGTGCCCCCTGCAGAACTTGAAGGGCTTCTTGTAAGCCATCCCTCCATTGCAGACGCAGCAGTAGTCCCACAAAAGGATGTTGTTGCTGGTGAACTTCCTGTTGCTTTCGTTGTGAGATCAAACGGCTTTGATCTAACTGAAGACGCTGTGAAAGAGTTTATAGCCAAACAGGTAGTGTTTTACAAAAGACTACACAAAGTTTATTTTGTTCATGCTATTCCCAAGTCTCCATCAGGAAAGATATTGAGAAAAGACCTTAGAGCAAAGCTGGAAGCGCCCGCCACTTCGACGACTTAA 1698 0.5236 MLITVAPSVDEVPAPKTDQNQNPQTTHIFKSKLPDIPISNHLPLHAYCFQNLSQFADRPCLIVGSAAKTYTYAETHLLSRKIAAGFSNLGIRKGDVVMILLQNSAEFVLSFLAASMIGAVATTANPFYTAAEIFKQFTASKAKLIVTQAMYVDKLRHHGDGANLSEDFKVVTVDDPPENCLHFSVLSEANENDMPEVEIHPDDAVALPFSSGTTGLPKGVILTHKSLTTSVAQQVDGENPNLYLTTEDVLLCVLPLFHIFSLNSVLLCALRAGSAVLLMQKFEIGTLLELTQRYRVSVAMVVPPLVLALAKNPMVADFDLSSIRLVLSGAAPLGKELEEALHNRVPHAVLGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVVDPETGRSLGYNQPGEICIRGLQIMKGYLNDDKATASTIDAEGWLHTGDVGYVDDDDEIFIVDRVKELIKFKGFQVPPAELEGLLVSHPSIADAAVVPQKDVVAGELPVAFVVRSNGFDLTEDAVKEFIAKQVVFYKRLHKVYFVHAIPKSPSGKILRKDLRAKLEAPATSTT 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00159 565 ProSitePatterns Putative AMP-binding domain signature. 207 218 IPR020845 -
Spst2g00159 565 Pfam AMP-binding enzyme 51 463 IPR000873 -
Spst2g00159 565 Gene3D - 458 560 IPR045851 -
Spst2g00159 565 Pfam AMP-binding enzyme C-terminal domain 472 547 IPR025110 -
Spst2g00159 565 FunFam 4-coumarate--CoA ligase 2 459 560 - -
Spst2g00159 565 Gene3D - 19 457 IPR042099 -
Spst2g00159 565 SUPERFAMILY Acetyl-CoA synthetase-like 35 559 - -
Spst2g00159 565 FunFam Long-chain-fatty-acid--CoA ligase FadD 30 458 - -
Spst2g00159 565 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 24 555 - -
Spst2g00159 565 CDD 4CL 38 553 - -
Spst2g00159 565 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00159 Spst-Chr2 1246090 1250572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00159 21 470 Monolignol Biosynthesis Gene Families AT1G65060 70.419 0.0 664
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00159 K01904 - gmx:547492 1001.12