Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00155 ATGGAGGGAGCATCGTGGAACAGCAGTGTTTGTGTGGCACCGTTTCTGAGCAAGACCTACGACATGGTAGATGACCCCTCCACCGACTCGGTCGTGTCGTGGGGCGAAAACAACAACACCTTTGTTGTCTGGAACGTTCCCCAATTCGCCACAGAGATCTTGCCCAAACATTTTAAGCACAATAACTTCTCCAGCTTCGTCAGGCAGTTGAATACTTATGGTTTTCGGAAGGTTGATCCGGATCAGTGGGAATTTGCAAATGAAGGATTTTTAAGAGGTGAAAAACAACTTTTAAAAAGTATCACTAGGCGGAAATCTGCTCATGTAAATGGTAATCAACAACCATCTGAAGTGCATAAATCATCTGTTAGAGCATGTGTTGAAGTGGGAAAATTTGGGCTTGAGGAAGAGGTGGAAAGACTGAAAAGGGATAAGAATGTTCTTATGCAGGAACTAGTTAGGTTGAGACAAAAACAGCAAGTGACTGATAACCAATTGCAAAATTTTGGGCAACGTGTGCAGTCGATGGAGCAGGGCCAGCAGCAAATGATGTCATTCCTGGCAAAGGCCATGCGAAGCCCAGGCTTCTTAGCTCAATTTGTACAGCAGAATGAAAGTAATAAACATATTACTGGTGGAAATAAAAAGAGGAGGATCCACAGGCAAGATAAAGATCATTTAGCCACCAACGGTCTCCATAATGCTCTTGATGGACACATAGTCAAGTACCAGAGTTCCGTAAACGATGCTGCAAAAGCACTATTTCGCCAGATATTGCAAATAAACAATTCTACAGAAACACAATCATCGATTAAGAACCCCGATGTCTTCCTCATTGATGATGTTCCTTCTGCAATTGCATCAGATAGCAGTAGTTCATCCACTCAGGTTTCTAATGTGACCCTTTCTACTGTACCTCCTGTTTCTGAGCTGACAAGTATGGAAGTAGAATCACAGTTTCCTGTTAATTATATGCCAAGTATATCTGAGGTGCAATCTTCAACCCCCGTATTGGGTTTTTGTCAAAGTCAAGGGGTGGAGACAGAAAGTAGTTTAGTGAATCATGAGCTGAATGTTGTGGGGGCTGGAACCGGGAACATGGGGGAGATAGATTTGTCATCTGTTTTGGATGGACCGCATACTGTAGAACCTGATTATTCTGCACCTAATGCAGATGGAATTTCCCAACTCCCAGAAATCAACGATGAGTTCTGGGAGTTGTTTTTCAGGCCAAGCTCACTTACAGGAGACACAGATGAGGGTTTGCCTTTGGAAAGAGAAAATGAGCAGGAAAATGTTGACAAGATGCAGCACGTTGACCATCTTACTAAACAGATGGGACTTCTTGCGTCGAAGTCCTAA 1362 0.4325 MEGASWNSSVCVAPFLSKTYDMVDDPSTDSVVSWGENNNTFVVWNVPQFATEILPKHFKHNNFSSFVRQLNTYGFRKVDPDQWEFANEGFLRGEKQLLKSITRRKSAHVNGNQQPSEVHKSSVRACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQKQQVTDNQLQNFGQRVQSMEQGQQQMMSFLAKAMRSPGFLAQFVQQNESNKHITGGNKKRRIHRQDKDHLATNGLHNALDGHIVKYQSSVNDAAKALFRQILQINNSTETQSSIKNPDVFLIDDVPSAIASDSSSSSTQVSNVTLSTVPPVSELTSMEVESQFPVNYMPSISEVQSSTPVLGFCQSQGVETESSLVNHELNVVGAGTGNMGEIDLSSVLDGPHTVEPDYSAPNADGISQLPEINDEFWELFFRPSSLTGDTDEGLPLERENEQENVDKMQHVDHLTKQMGLLASKS 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00155 453 FunFam Heat shock transcription factor 1 8 105 - -
Spst2g00155 453 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 9 288 IPR027725 -
Spst2g00155 453 SMART hsfneu3 11 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst2g00155 453 Pfam HSF-type DNA-binding 15 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst2g00155 453 SUPERFAMILY "Winged helix" DNA-binding domain 12 104 IPR036390 -
Spst2g00155 453 PRINTS Heat shock factor (HSF) domain signature 53 65 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst2g00155 453 PRINTS Heat shock factor (HSF) domain signature 66 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst2g00155 453 PRINTS Heat shock factor (HSF) domain signature 15 38 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst2g00155 453 Coils Coil 131 158 - -
Spst2g00155 453 ProSitePatterns HSF-type DNA-binding domain signature. 54 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst2g00155 453 Gene3D - 8 105 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00155 Spst-Chr2 1208303 1210899 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00155 12 453 HSF AT5G16820 51.948 2.08e-138 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Spst2g00155 HSF_DNA-bind 5.6e-32 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g00155 2 1208303 1210899 Spst2g00155 2 1208303 1210899 ECH
Spst2g00155 2 1208303 1210899 Spst10g01074 10 11474305 11475883 PCT