Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00140 ATGAATAGGAGTGGCGGAGGAGAGATGAGTAAGTGGCCTTTCACAGTGTCTCAGTGGCAGGAACTGGAACATCAAGCTTTGATTTACAAATACATGGTCGCGGGTCTTCCTGTGCCTCCTGATCTCGTCATTCCCATTCAGAACAGCTTCCATTCTATTTCCCAAACATTCTTCCACCATCCCTCTTCCGCCCTGAGTTATTGTTCCTTCTATGGGAAGAAGGTGGACCCGGAGCCAGGACGATGCAGGAGGACTGATGGCAAAAAGTGGAGGTGCTCCAAGGAAGCCTACCCGGACTCCAAGTACTGCGAGCGACACATGCACCGTGGCCGCAACCGTTCAAGAAAGCCTGTGGAATCACAAACTATGACACAGTCATCATCCACCGTGACATCATTGACTGTGAATGCTGGCAGCAGCAGCAGCAGCAGTGGAACTGGAAATTTCCAGAACCTTACCCCCACAAATGCATATGGTAATCCCCAAGGCACTGGTTCTGGAACAGACCAAACCCACTATCATCTGGATTCCGTTCCCTATGGGATCCCAAATAAAGAATACAGGTATTTTCAAGGATCAAAATATGATGGTGGTGAACGTAGTTTCTTGTCCAAAACTTTAGGAAGCAACAAGGTTCTCCGCATGGAGTCACAGCTGGATACCTCTTTGATGCCAACAGGAGGACCCTCCTCATTCTCCACATTGAGATCAAATAATAATTCCATGTTACAGAGTGATTATCTGCAGCCTTCTTTCTTATCTACTGAATATGCCTCAGGAGAAACTATGAAGCAAGAGGGTCAGTCCCTTCAACCTTTCTTTGATGAATGGCCTAAAAGCAGGGACTCATGGTCTGGTCTGCAAGCTGAGAGATCTAATCACACAACTTTCTCTTCCACTCAACTCTCAATATCCATTCCTATGTCATCATCAAATTTCTCTACAACTAGCTCTCAAACCAAACATGGTGAAATTTAA 978 0.4611 MNRSGGGEMSKWPFTVSQWQELEHQALIYKYMVAGLPVPPDLVIPIQNSFHSISQTFFHHPSSALSYCSFYGKKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVESQTMTQSSSTVTSLTVNAGSSSSSSGTGNFQNLTPTNAYGNPQGTGSGTDQTHYHLDSVPYGIPNKEYRYFQGSKYDGGERSFLSKTLGSNKVLRMESQLDTSLMPTGGPSSFSTLRSNNNSMLQSDYLQPSFLSTEYASGETMKQEGQSLQPFFDEWPKSRDSWSGLQAERSNHTTFSSTQLSISIPMSSSNFSTTSSQTKHGEI 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00140 325 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
Spst2g00140 325 MobiDBLite consensus disorder prediction 117 171 - -
Spst2g00140 325 PANTHER GROWTH-REGULATING FACTOR 5 10 312 IPR031137 GO:0005634|GO:0006351|GO:0032502
Spst2g00140 325 ProSiteProfiles QLQ domain profile. 13 48 IPR014978 GO:0005524|GO:0005634|GO:0006355
Spst2g00140 325 MobiDBLite consensus disorder prediction 108 171 - -
Spst2g00140 325 Pfam QLQ 13 47 IPR014978 GO:0005524|GO:0005634|GO:0006355
Spst2g00140 325 SMART QLQ_2 12 48 IPR014978 GO:0005524|GO:0005634|GO:0006355
Spst2g00140 325 Pfam WRC 77 119 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00140 Spst-Chr2 1100476 1104277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00140 4 119 GRF Transcription Factor Family AT3G13960 60.169 7.70e-46 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Spst2g00140 WRC 1.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00140 - - gmx:100797906 542.347