LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst2g00121	ATGGCTTCGGAAGGCGAGATTGTTAGACCAAAGGTGGAATTCGAAGCAGAAGGTGCTCTGAATTCAAAGATGAAGGGTTCTGGAAACATAAGCAGTAAGGATATGATATTCAGAGCTGATAAGATTGATCTCAAGAGTTTGGATGCCCAGCTGGAGAAGCACTTGAGCAGGGTTTGGTCAAGGAGCACTGAGGCAAAACGGCCCAAAGAAGATTGGGAGATTGATTTGGCCAAATTGGATATACGATATGCTGTGGCTCATGGAGCTTATGGTACTGTATACAGGGGAACTTATGATACCCAAGACGTTGCAGTGAAAGTATTGGACTGGGGCGAGGATGGTGTAGCTACTCCCGCTGAAGCTGCTGCTTTACGGGCATCTTTTAGACAGGAAGTTGCTGTCTGGCACAAACTTGACCATCCTAATGTGACAAAATTTGTTGGAGCTTCAATGGGCACTTCAAATCTTAAGATTCCCTCCAGTAACTATTCGAATGGGGAAGAAGGGTCCCTTCCTTCCAGGGCCTGCTGTGTCATTGTTGAGTTTATCTCTGGTGGGACACTAAAGCAATACTTGATAAAAAATAGGAGGAAGAAACTTGCTTACAAGATTGTGATTCAGCTGGCTTTGGACCTTGCAAGGGGTCTTAGTTATCTACACTCGAAGAAGATTGTTCACCGAGATGTTAAATCAGAGAATATGTTACTAAATCCTAGTCGGAATCTAAAAATAGCAGATTTTGGGGTTGCTCGAGTTGAGGCTATGAATCCAAGCGACATGACAGGTGAAACTGGAACCCTTGGATATATGGCCCCAGAGGTTCTGGATGGGAAGCCTTACAACAGGAGATGCGATGTCTATAGCTTTGGCATCTGCTTGTGGGAAATTTACTGCTGTGATATGCCTTATCCAGATCTAAGTTTTGCTGATGTTTCATGTGCGGTTGTTCGCCATAATTTACGACCAGATATTCCGAGGTGTTGTCCAAGCGCCTTATCAAATATCATGCGGAGATGCTGGGATGCGAATCCAAACAAGCGCCCAGACATGGAAGAGGTGGTGAGAATGCTGGAAGCTCTTGATACTAGCAAAGGTGGTGGAATGATACCAGAAGATCAGAGTCCAGGGTGCTTCTGTTTTGCCCCAACCCGTGGCCCCTAA	1161	0.4539	MASEGEIVRPKVEFEAEGALNSKMKGSGNISSKDMIFRADKIDLKSLDAQLEKHLSRVWSRSTEAKRPKEDWEIDLAKLDIRYAVAHGAYGTVYRGTYDTQDVAVKVLDWGEDGVATPAEAAALRASFRQEVAVWHKLDHPNVTKFVGASMGTSNLKIPSSNYSNGEEGSLPSRACCVIVEFISGGTLKQYLIKNRRKKLAYKIVIQLALDLARGLSYLHSKKIVHRDVKSENMLLNPSRNLKIADFGVARVEAMNPSDMTGETGTLGYMAPEVLDGKPYNRRCDVYSFGICLWEIYCCDMPYPDLSFADVSCAVVRHNLRPDIPRCCPSALSNIMRRCWDANPNKRPDMEEVVRMLEALDTSKGGGMIPEDQSPGCFCFAPTRGP	386

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst2g00121	386	CDD	STKc_MAP3K-like	85	357	-	-
	Spst2g00121	386	PRINTS	Tyrosine kinase catalytic domain signature	284	306	IPR001245	GO:0004672\|GO:0006468
	Spst2g00121	386	PRINTS	Tyrosine kinase catalytic domain signature	328	350	IPR001245	GO:0004672\|GO:0006468
	Spst2g00121	386	PRINTS	Tyrosine kinase catalytic domain signature	218	236	IPR001245	GO:0004672\|GO:0006468
	Spst2g00121	386	PRINTS	Tyrosine kinase catalytic domain signature	180	193	IPR001245	GO:0004672\|GO:0006468
	Spst2g00121	386	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	63	360	-	-
	Spst2g00121	386	SUPERFAMILY	Protein kinase-like (PK-like)	61	357	IPR011009	-
	Spst2g00121	386	ProSiteProfiles	Protein kinase domain profile.	79	360	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Spst2g00121	386	SMART	serkin_6	79	360	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Spst2g00121	386	FunFam	Kinase suppressor of Ras 1	68	163	-	-
	Spst2g00121	386	FunFam	Serine/threonine-protein kinase HT1	183	368	-	-
	Spst2g00121	386	Gene3D	Transferase(Phosphotransferase) domain 1	185	368	-	-
	Spst2g00121	386	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	224	236	IPR008271	GO:0004672\|GO:0006468
	Spst2g00121	386	Pfam	Protein tyrosine and serine/threonine kinase	83	357	IPR001245	GO:0004672\|GO:0006468
	Spst2g00121	386	Gene3D	Phosphorylase Kinase; domain 1	68	161	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst2g00121	Spst-Chr2	1015614	1018079	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst2g00121	13	386	MAP Kinase Kinase Kinase	AT3G22750	78.457	0.0	621

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-4	Spst2g00121		PK_Tyr_Ser-Thr	1.6e-58	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst2g00121	-		-	gmx:100803917	714.531