Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00078 ATGGTATGCTGTGTGAGGTGTTCCAAAGGGTGTAAAATCTGGTGTGGTGTCACTGCCATTCTTCTAGTCATTTTGTTAGTGACACTGGTGGTGGTCTTATTCCTCACTGTCTTCAAGCTTAAAGACCCTCACATTACCCTCCAATCTGTTAAGCTTGAAGGTTTCAAACTCCAGTTACCAACATTGAAACTAAATGTATCATTAGGCATAGTGGTCACGGTTGAAAACCCCAACCATGGAAGCTTTACCTACCAGAACACCACAGCATATCTTCACTATCGAGGGACTCGTGTTGCCGAGGCTCCACTGCATGAGGACACTATTCCAGCTCGTGATGACCATAACATAACCACATCTCTCACTATATTTGCAGGTCTCACAAAGTTTAGGGATTTATCCACTGATTTTTCGAGGGGTGTTATAAATTTTACCTCAACAACCACCTTCTTGGGGAAAGTCAAGGTGTTGAACCTCTTCAAGATGAAGGCCACTGTGAAAAGCAAAAGACAAAAGGAAACGAGTCAATTTCGGAATTACCCTTCGATCTGGCACTCTCGTGTTCAAATCCGGAATTTCAATTGGGATCGGGCTTTTCTTCTTCTATCCTCGGCCTCATTTGTCAACACTTTGGGTTGCGTCTCCCACAGAGAGAGGGACCTTCTCCTCCTCCTTCCTCTTCTCCGTCTTCTCTCGTCGATGGACCTTCATGTTCGACCAGATCACTGCCTCCCGGAGAGGAAAGGCCGGAAGAGGAAGTTGGAGGAGGATTTCGAAGACGACCGACAGATCTCTGCCCCTCCTACCGGCCACGCCCGCGACGCCCTCCTCTCTGACGTCAAGGACCAGGTCACCGTCCTCGATTCCACCTTCTCATGGAAGGAATCCGATCGTGCTGCCGCCAAGCGCGCCACACACGCCCTCGCCGATCTCGCCAAAAACGAGGAAGTCGTGAATGTGATTGTTGAAGGAGGCGCCATTCCTGCTTTGGTTAAACATCTTCAAGCGCCTCCACAGGCTGAAAGCGACCGGTTGCAGAGGCCAATGCCGTTTGAGCACGAGGTCGAGAAAGGAAGTGCTTTCGCGCTTGGACTTCTCGCAGTCAAGCCGGAGCACCAACAACTCATTGTTGACAGTGGTGCCTTAAAACATCTCGTTGATCTGTTGAAGAGACACAAAAACGGTTCAACATGTCGTGCCATTAATAGTCTCATTCGTAGGGCTGCAGACGCGATCACTAATCTTGCTCATGAGAACAGCAGTATTAAGACTCGTGTGAGGATGGAAGGTGGGATTCCACCCCTCGTTCATTTACTTGAATTTGCCGATACCAAGGTGCAAAGAGCAGCTGCTGGTGCATTGCGAACCCTTGCTTTCAAAAATGATGAAAATAAAAACCAGATCGTTCAATGCAATGCCCTTCCAACTCTAATTCTAATGCTCCGATCAGAAGATGCTGCTATTCATTATGAAGCGGTTGGTGTGATTGGAAATCTGGTCCACTCTTCTCCTAATATAAAGAAAGAAGTTCTTCTTGCGGGTGCCCTACAACCTGTTATTGGATTACTTAGCTCCTGTTGCTCTGAAAGTCAGCGGGAAGCAGCCTTGTTACTTGGACAGTTTGCAGCAACTGATTCAGACTGCAAGATTCACATTGTTCAGAGGGGTGCTGTCCGACCTTTGATAGAGATGCTTCAGTCCCCTGATGTTCAGCTAAAAGAAATGTCTGCCTTTGCGTTGGGGAGATTGGCACAGGACACACATAACCAAGCTGGTATTGCACACAATGGTGGCTTGATTCCATTATTGAAGCTTCTTGACTCAAAAAATGGCTCTTTGCAACATAATGCTGCTTTTGCTCTTTATGGCCTTGCAGATAATGAGGATAATGTGGCCGATTTTATTAGGGTAGGTGGAATTCAGAGACTTCAGGATGGAGAGTTTATTGTTCAAGCAACCAAGGATTGTGTTGCAAAGACATTGAAAAGATTAGAAGAGAAAATTCATGGGCGAGTGCTGAACCATTTGTTATATCTCATGCGAGTTTCAGAAAAGGCTTTTCAAAGACGAGTTGCTTTGGCTCTTGCTCACCTCTGTTCTGCAAATGACCAGAGAAAAATATTTATTGATCACCATGGTTTGGAGTTGCTTATGGGGCTTCTTGGATCTTATTATAACCCTAAGCAACAACTTGATGGAGCTGTGGCTTTATGCAAGTTGGCCAATAAAGCCTTGACTCTATCTCCTGTTGATGCTGCACCCCCATCTCCCACACCCCAGGTCTATTTGGGAGAGCAGTATGTAAACAATGCTACCTTGTCCGATGTTATATTTTTGGTTGAAGGGAAACGATTTTATGCTCACAGAATATGTCTGCTTGCATCTTCTGATGCATTTCGTGCTATGTTTGATGGTGGATATAGGGAGAAGGAGGCACGGGACATAGAGATTCCGAACATTAGATGGGAGGTTTTTGAGCTGATGATGAGATTTATATACACTGGATCAGTTGAGATCACTCTTGATATTGCTCAAGATCTCCTCCGAGCGGCTGATCAATATCTTTTAGAAGGACTTAAGAGACTCTGCGAGTACACGATTGCACAGGATATATCACTTGAGAACGTAGCAAGTATGTATGAACTTTCAGAAGCATTTAATGCTACATCGTTGAGGCACACATGCATCCTTTTTATCTTGGAACACTTCGATAAATTGAGTGCAAAGCCAGGACATTCCCATCTGATTCAGCGAATAATACCGGAGATCCAGAATTACTTTGTTAAAGCTCTTACAAAGGCCAATTCCAACAACCAGCCTTAG 2820 0.4539 MVCCVRCSKGCKIWCGVTAILLVILLVTLVVVLFLTVFKLKDPHITLQSVKLEGFKLQLPTLKLNVSLGIVVTVENPNHGSFTYQNTTAYLHYRGTRVAEAPLHEDTIPARDDHNITTSLTIFAGLTKFRDLSTDFSRGVINFTSTTTFLGKVKVLNLFKMKATVKSKRQKETSQFRNYPSIWHSRVQIRNFNWDRAFLLLSSASFVNTLGCVSHRERDLLLLLPLLRLLSSMDLHVRPDHCLPERKGRKRKLEEDFEDDRQISAPPTGHARDALLSDVKDQVTVLDSTFSWKESDRAAAKRATHALADLAKNEEVVNVIVEGGAIPALVKHLQAPPQAESDRLQRPMPFEHEVEKGSAFALGLLAVKPEHQQLIVDSGALKHLVDLLKRHKNGSTCRAINSLIRRAADAITNLAHENSSIKTRVRMEGGIPPLVHLLEFADTKVQRAAAGALRTLAFKNDENKNQIVQCNALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKKEVLLAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKIHIVQRGAVRPLIEMLQSPDVQLKEMSAFALGRLAQDTHNQAGIAHNGGLIPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGIQRLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVSEKAFQRRVALALAHLCSANDQRKIFIDHHGLELLMGLLGSYYNPKQQLDGAVALCKLANKALTLSPVDAAPPSPTPQVYLGEQYVNNATLSDVIFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKEARDIEIPNIRWEVFELMMRFIYTGSVEITLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVASMYELSEAFNATSLRHTCILFILEHFDKLSAKPGHSHLIQRIIPEIQNYFVKALTKANSNNQP 939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00078 939 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 429 464 IPR000225 GO:0005515
Spst2g00078 939 SMART arm_5 460 500 IPR000225 GO:0005515
Spst2g00078 939 SMART arm_5 544 584 IPR000225 GO:0005515
Spst2g00078 939 SMART arm_5 502 542 IPR000225 GO:0005515
Spst2g00078 939 SMART arm_5 700 741 IPR000225 GO:0005515
Spst2g00078 939 SMART arm_5 418 458 IPR000225 GO:0005515
Spst2g00078 939 SMART arm_5 585 625 IPR000225 GO:0005515
Spst2g00078 939 SMART arm_5 313 367 IPR000225 GO:0005515
Spst2g00078 939 SMART arm_5 368 416 IPR000225 GO:0005515
Spst2g00078 939 Pfam BTB/POZ domain 766 868 IPR000210 GO:0005515
Spst2g00078 939 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 471 513 IPR000225 GO:0005515
Spst2g00078 939 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 555 597 IPR000225 GO:0005515
Spst2g00078 939 ProSiteProfiles BTB domain profile. 773 840 IPR000210 GO:0005515
Spst2g00078 939 Pfam Late embryogenesis abundant protein 72 169 IPR004864 -
Spst2g00078 939 SUPERFAMILY LEA14-like 24 122 - -
Spst2g00078 939 SMART BTB_4 773 870 IPR000210 GO:0005515
Spst2g00078 939 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 379 429 IPR000225 GO:0005515
Spst2g00078 939 CDD BTB_POZ_ARIA_plant 760 875 - -
Spst2g00078 939 Gene3D - 273 439 IPR011989 -
Spst2g00078 939 Gene3D - 650 755 IPR011989 -
Spst2g00078 939 SUPERFAMILY ARM repeat 670 742 IPR016024 -
Spst2g00078 939 SUPERFAMILY ARM repeat 294 643 IPR016024 -
Spst2g00078 939 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 324 380 IPR000225 GO:0005515
Spst2g00078 939 Gene3D - 440 649 IPR011989 -
Spst2g00078 939 MobiDBLite consensus disorder prediction 247 270 - -
Spst2g00078 939 Gene3D Potassium Channel Kv1.1; Chain A 756 902 IPR011333 -
Spst2g00078 939 Pfam Armadillo/beta-catenin-like repeat 425 457 IPR000225 GO:0005515
Spst2g00078 939 Pfam Armadillo/beta-catenin-like repeat 460 499 IPR000225 GO:0005515
Spst2g00078 939 Pfam Armadillo/beta-catenin-like repeat 544 583 IPR000225 GO:0005515
Spst2g00078 939 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 596 638 IPR000225 GO:0005515
Spst2g00078 939 FunFam Armadillo/beta-catenin repeat family protein 764 908 - -
Spst2g00078 939 SUPERFAMILY POZ domain 765 867 IPR011333 -
Spst2g00078 939 Gene3D - 30 173 - -
Spst2g00078 939 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 241 937 IPR044282 -
Spst2g00078 939 MobiDBLite consensus disorder prediction 247 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00078 Spst-Chr2 655435 664234 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00078 528 642 U-box Gene Family AT3G46510 29.915 3.36e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Spst2g00078 BTB 1.5e-25 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00078 - - pvu:PHAVU_002G047400g 1347.03