Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00071 ATGGAGCAAGCGGTGTCACTGATTGGTGCCCTCAACCTCGTCTCCCGGAACCTCCCTCTCCCCCCCGACCTCTTCCACACCGTTTCTTCAATCTATCACCGATCTGTCCCTCTCCATTCATCCGTACTCTTCTCCTCTTCTCCTTCACTCCTTCACTCCTTCTTTCTTCCTCGCAACAACTCTTCTCTTACTCTTCTCTTCTTCTTCTCTTCTTTTTCTCTTACGCAGCCACATGAAGCGAATTCCTCACCGGAACAACATTTGTTGGCCGACCTTCAAGATGCGCTGTTGGACCAACGTCCTCACTGCTCCTCCACTTCCAAATTGAACAAAACTATCCAAAGCCGTTATCAGAGTCTGATTCACCACCGCCTATCCCAACTCCAAGAATTGCCTTCAAGCATGGGAGAGGACTTACAGACAAGGTGCTTGCTTGAGCTTTATGGATTAAAGTTAGCTGAGTTGCAGAGGATGGTACGGACAGATGTGAGTTCTGAATACTGGCTCAATGTTAAATGTGCATATCCTGAAAGGCAATTGTTTGATTGGAGCATGATGCGGTTACGTCGTCCGCTGTATGGTGTTGGAGATCCATTTGCCATGGATGCTGACGATCAAATAAGGAAGAAACGGGATGCTCAGAGACTATCAAGATTGGAAGAGCAGGCAAAAACCCATATGGAGACTAGAAAAAGAAGATTTTTTGCAGAAATACTGAATACTGTCCGTGAGTTCCAATTACAAATTCAAGCTTCTTTGAAGCGGAGAAAACAGAGGAATGATGGTGTCCAGGCATGGCATGGAAGGCAAAGACAACGTGCAACACGGGCAGAGAAATTGAGATTCCAAGCCTTAAAGTCTGATGATCAAGAAGCTTACATGAGAATGGTAAAAGAGAGTAAGAACGAAAGATTGACTTTACTTCTTGAAGAAACAAATAAACTACTCGTAAATTTGGGAGCAGCTGTTCAACGTCAAAAGGATTCGAAACAATCAGATGGTATTGAACCATTGGAAGATTTAGAAACTGATTTACTTGAGTCAGATAATGGAATTTCTAAGGAATCACCTCTAGAGGAAGATGTGGATTTGATAGATTCTGACCATAATGGTGATGATAATAGTGATTTACTTGAAGGTCAGCGGCAATACAATTCTGCCATTCATTCAATTCAAGAAAAGGTAACTGAGCAACCATCTATTCTTCAAGGTGGAGAATTAAGACCATACCAGCTAGAAGGCCTCCAGTGGATGCTTTCTTTGTTTAATAACAACTTAAATGGAATATTGGCTGATGAAATGGGTCTTGGGAAGACAATACAAACCATCTCGTTGATAGCACATCTTTTGGAACACAAGGGGGTAATTGGTCCTCACTTGATTGTGGCTCCAAAGGCTGTACTGCCAAATTGGATCAATGAATTCTCAACATGGCTTCCTAGCATCACAACCGTTCTCTATGACGGACGGCTAGATGAGAGGAAAGCAATGAAGGAAGAACTGTCAGGAGAGGGAAAATTCAATGTTCTGATAACACACTATGATCTTATAATGAGAGATAAAGCATTCCTCAAGAAAATCCATTGGCACTACTTGATTGTGGATGAAGGGCATCGATTGAAGAACCATGAGTGTGCTCTAGCGAGAACCCTGGACTCTAGCTATCAAATTCATCGAAGACTTCTGTTGACCGGTACCCCAATTCAGAACACTTTGCAGGAACTGTGGTCCCTTCTCAATTTTCTTCTTCCAAATATTTTCAATTCGGTTCAGAATTTCGAGGACTGGTTTAATGCTCCCTTTGCAGACCGAGTTGATGTCTCTCTAACGGATGAAGAACAGTTATTGATCATTCGGCGTCTACATCAAGTGATAAGGCCCTTCATACTGAGAAGGAAAAAGGATGAGGTGGAAAAATTTCTTCCTAGCAAATCTCAGGTTATACTGAAATGTGACTTATCAGCATGGCAGAAAGTATATTATCAACAAGTCACTGACGTCGGCAGAGTTGGGTTACACAACGGTTCTGGAAAATCAAAAAGTCTACAGAACTTGACAATGCAACTCAGAAAATGTTGTAACCATCCCTACCTCTTTGTGGGTGACTATGATATCTATAAGCACAAGGAGGAGATTGTCCGATCATCAGGAAAGTTTGAACTTCTTGACCGCTTGCTTCCAAAACTTCGTAGAGCTGGTCACAGAGTCCTCCTTTTTTCACAGATGACTCGGCTCATGGATATTCTTGAAATTTATTTGCGACTACATGATTTTAAATTTCTTAGACTAGATGGCTCAACAAAAACTGAGGAAAGAGGTTCCCTACTACGGAAATTCAATGCACCTGATTCTCCATACTTCATGTTTCTATTGAGCACCCGTGCTGGAGGTCTTGGTTTGAACTTACAAACAGCAGATACTGTTATAATTTTTGACAGTGATTGGAACCCGCAAATGGATCAACAAGCTGAGGATCGAGCCCATCGCATTGGACAAAAAAAGGAAGTTAGAGTTTTTGTTTTAGTAAGTGTGGGATCAATTGAAGAGGTGATTTTAGAGCGTGCTAATCAAAAGATGGGAATTGATGCTAAAGTTATTCAGGCGGGGCTTTTTAACACAACTTCGACAGCACAAGACAGAAGGGAAATGTTGGAGGAGATTATGCGCAGAGGTACTAGCTCACTTGGTACAGATGTGCCAAGTGAGAGAGAAATTAACCGCCTTGCGGCCCGATCTGATGAGGAATTTTGGCTTTTTGAGACAATGGATGAAGAAAGAAGGCAAGAGGAGGAGTACAGAACTCGTCTCATGGAGGAGCATGAACTACCAGATTGGGTGTACTCTCCACTTAATAATAAGGATGATAATGTCAAAGCTTTTGACAGTGGCAGTGGTATCGGAAAGCGGAAAAGAAAAGAAGTGGTATACGCAGATACATTAAGTGATGTACAATGGTTGAAGGCTGTGGAGAATGGACAGGACATATCTAAGCTTTCAGTCAAACGGAAAAGAAGACACCACCTCACTGTTGACAACCATGCACAATCTAGTGATGACACGGGGAGAGAAGTAGGGTCATTAGAGTTAAGGAATGGCAGATCAGGTGAAGACAATTTTGACGAGACTCCTGGCTCTAAGAGACTCAAGCCTGAAGAAATAAATTCCCGGAAACATGAAAACGAGCATATATTTTCCTGGAGTACTCACAGAAAGAAGAGATCAAGCTATCTTGGCCAGGGTTCATTCTCTGATAGCAGTAGAGGGCAGAATGCAAATGCAAGAGGGAACGTTAGTTGA 3297 0.4237 MEQAVSLIGALNLVSRNLPLPPDLFHTVSSIYHRSVPLHSSVLFSSSPSLLHSFFLPRNNSSLTLLFFFSSFSLTQPHEANSSPEQHLLADLQDALLDQRPHCSSTSKLNKTIQSRYQSLIHHRLSQLQELPSSMGEDLQTRCLLELYGLKLAELQRMVRTDVSSEYWLNVKCAYPERQLFDWSMMRLRRPLYGVGDPFAMDADDQIRKKRDAQRLSRLEEQAKTHMETRKRRFFAEILNTVREFQLQIQASLKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKSDDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQKDSKQSDGIEPLEDLETDLLESDNGISKESPLEEDVDLIDSDHNGDDNSDLLEGQRQYNSAIHSIQEKVTEQPSILQGGELRPYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAHLLEHKGVIGPHLIVAPKAVLPNWINEFSTWLPSITTVLYDGRLDERKAMKEELSGEGKFNVLITHYDLIMRDKAFLKKIHWHYLIVDEGHRLKNHECALARTLDSSYQIHRRLLLTGTPIQNTLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKFLPSKSQVILKCDLSAWQKVYYQQVTDVGRVGLHNGSGKSKSLQNLTMQLRKCCNHPYLFVGDYDIYKHKEEIVRSSGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDILEIYLRLHDFKFLRLDGSTKTEERGSLLRKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERANQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFETMDEERRQEEEYRTRLMEEHELPDWVYSPLNNKDDNVKAFDSGSGIGKRKRKEVVYADTLSDVQWLKAVENGQDISKLSVKRKRRHHLTVDNHAQSSDDTGREVGSLELRNGRSGEDNFDETPGSKRLKPEEINSRKHENEHIFSWSTHRKKRSSYLGQGSFSDSSRGQNANARGNVS 1098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00071 1098 SMART ultradead3 403 596 IPR014001 -
Spst2g00071 1098 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 383 632 IPR027417 -
Spst2g00071 1098 Gene3D - 638 938 IPR027417 -
Spst2g00071 1098 MobiDBLite consensus disorder prediction 1070 1098 - -
Spst2g00071 1098 MobiDBLite consensus disorder prediction 1010 1068 - -
Spst2g00071 1098 Pfam Snf2-ATP coupling, chromatin remodelling complex 925 986 IPR029295 GO:0042393
Spst2g00071 1098 PANTHER SNF2/RAD54 HELICASE FAMILY 180 1015 - -
Spst2g00071 1098 CDD SF2_C_SNF 709 842 - -
Spst2g00071 1098 SMART helicmild6 747 831 IPR001650 -
Spst2g00071 1098 MobiDBLite consensus disorder prediction 344 378 - -
Spst2g00071 1098 SMART SnAC_2 924 986 IPR029295 GO:0042393
Spst2g00071 1098 FunFam Probable ATP-dependent DNA helicase CHR12 638 937 - -
Spst2g00071 1098 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 419 585 IPR014001 -
Spst2g00071 1098 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 634 885 IPR027417 -
Spst2g00071 1098 FunFam Chromatin structure-remodeling complex protein SYD 398 641 - -
Spst2g00071 1098 Pfam Helicase conserved C-terminal domain 718 831 IPR001650 -
Spst2g00071 1098 Gene3D - 376 631 IPR038718 -
Spst2g00071 1098 MobiDBLite consensus disorder prediction 1003 1098 - -
Spst2g00071 1098 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 721 888 IPR001650 -
Spst2g00071 1098 MobiDBLite consensus disorder prediction 347 376 - -
Spst2g00071 1098 Pfam SNF2-related domain 410 698 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00071 Spst-Chr2 601237 607776 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00071 714 849 RAD5 or RAD16-like Gene Family AT5G43530 39.130 1.20e-21 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Spst2g00071 SNF2_N 8.5e-69 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00071 - - gmx:100775993 1809.65