Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00065 ATGTTTGATTCTCACCCTCACATGCTTGATATGTCACCCCACAAGACTACTTTCTCTGAGAGTAACTTGGGAAAGGTCAGAGATGATGAATATGAGAGCAAGTCCGGCACTGACACCATGGACGCCCCTTCCGGTGACGACCAAGACCCCAACCCAAGACCCAAAAAGAAGGGTTACCGTCGTCACACACAGCGCCAAATAGAAGAAATGGAAGCCTTCTTCAAGCAGTGTCCTCATCCAGATGACAAACAAAGAAAAGAGCTCAGCCGTGATCTGGGGTTAGAGCCTTTGCAAGTCAAATTTTGGTTCCAAAACAAGCGCACCCAGATGAAGACTCAACATGAACGACATGAAAATTCTATTCTGAAGGCCGAAAATGAAAAGCTTCGCGCTGAGAACAACAGGTACAAGGAGGCCCTAACCAATGCTACATGCCCCAACTGTGGAGGCCCAGCTGCTCTCGGCGAAATGTCCTTCGACGAACAACACTTGAGGATTGAGAATGCTAGGTTGAGAGAAGAGATTGATAGGATTTCAGAAATTGCGGCGAAGTATGTTGGAAAGCCCGTGACGTCTTCGTACTCCAACCTTTCATCTCTCAACAACAATCACATGCCTGTTGGTAACTATGGAGCACAATCAGGCACTGTAGGAGAAATGTATGGTGGTAGTGACCTTTTTAGGTCACTCCCAGCTCCAGCTGATGCTGACAAGCCCATGATTGTGGAGCTTGCTGTGGCAGCTATGGAGGAACTCTCAAGACTAGCTCAGGCTGGAGACTCTTTATGGGTCCCAGGCAACCACCACTCTGAGATTCTAAATGAAGATGAATATTTGAGGAGTTTCCCTACTAGAGGTTTAGGTCCCAAACCCTTGGGCTTGAGATCTGAAGCTTCAAGGGAATCCATGGTGGTCATCATGAATCACATTAACCTGATTGATATCCTTATGGATGTGAACCAATGGTCAACTGTGTTTTGCGGTATTGTCTCGAGAGCATTGACCCTTGAAGTCCTTTCAACTGGAGTAGCAGGAAACTACAACGGAGCCTTGCAAGTGATGTCGGCTGAGTTCCAAGTCCCTTCACCACTTGTTCCCACTCGTGAGAACTATTTCGTAAGATACTGTAAGCAGCAACCAGATGGGATATGGGCGGTGGTCGATGTTTCCTTGGATAATCTGCGACCCAGCACGATCTCAAGAAGCCGAAGAAGGCCCTCTGGCTGCTTAATTCAAGAATTGCCAAATGGTTACTCCAAGGTTACATGGATTGAACATGTAGAAGTGGATGATAGAGCGGTGCATAGCATATATAAACCCCTAGTGAATTCCGGCCTCGCCTTTGGAGCTAAACGCTGGGTGGCTACGTTAGACAGACAATGCGAACGTCTTGCCAGTTCAATGGCCAACAATATACCAGCAGGGAACCTGTGTGTGATAACCAGTGCTGAGGGAAGGAAAAGTATGCTGAAGCTGGCGGAGAGAATGGTTATTAGCTATTGCACTGGTGTGGGTGCTTCTACTGCACATGCTTGGACAACGCTATCCGCAACTGGATGTGATGACGTGAGGGTCATGACTAGAAAGAGCACCGACGAACCTGGCAGACCCCCCGGTATAGTGCTCAGTGCTGCCACTTCTTTCTGGCTCCCAGTTCCTCCAAAGAGGGTTTTTGATTTCCTACGTGATGAAAACTCAAGAAATGAGTGGGACATTCTCTCCAACGGGGGTCTAGTTCAAGAATTGGCACACATAGCAAATGGTCGTGATCCTGGCAACTGTGTCTCCCTACTTCGAGTCAACAGTGCAAATTCAAGCCAAAGTAATATGCTGATTCTTCAAGAGAGTTGCACTGATTCTACTGGCTCATATGTAGTTTATGCTCCTGTGGATATTGTTGCTATGAATGTAGTCTTGGGTGGAGGGGATCCAGATTATGTTGCCCTGCTTCCCTCAGGCTTTGCTATTCTTCCTGATGGGCCTGGAATAAACGGAGGGTCAATAAATGATGTTGGATCTGGAGGTTCTCTACTCACAGTTGCATTCCAGATCTTAGTTGATTCAGCCCCAACAGCAAAGCTATCTTTGGGTTCAGTTGCCACTGTTAACAGTCTAATTAAGTGCACAGTTGAAAGGATCAAGGTAGCAGTGATACGTGAGAACGCCTAA 2169 0.4716 MFDSHPHMLDMSPHKTTFSESNLGKVRDDEYESKSGTDTMDAPSGDDQDPNPRPKKKGYRRHTQRQIEEMEAFFKQCPHPDDKQRKELSRDLGLEPLQVKFWFQNKRTQMKTQHERHENSILKAENEKLRAENNRYKEALTNATCPNCGGPAALGEMSFDEQHLRIENARLREEIDRISEIAAKYVGKPVTSSYSNLSSLNNNHMPVGNYGAQSGTVGEMYGGSDLFRSLPAPADADKPMIVELAVAAMEELSRLAQAGDSLWVPGNHHSEILNEDEYLRSFPTRGLGPKPLGLRSEASRESMVVIMNHINLIDILMDVNQWSTVFCGIVSRALTLEVLSTGVAGNYNGALQVMSAEFQVPSPLVPTRENYFVRYCKQQPDGIWAVVDVSLDNLRPSTISRSRRRPSGCLIQELPNGYSKVTWIEHVEVDDRAVHSIYKPLVNSGLAFGAKRWVATLDRQCERLASSMANNIPAGNLCVITSAEGRKSMLKLAERMVISYCTGVGASTAHAWTTLSATGCDDVRVMTRKSTDEPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENSRNEWDILSNGGLVQELAHIANGRDPGNCVSLLRVNSANSSQSNMLILQESCTDSTGSYVVYAPVDIVAMNVVLGGGDPDYVALLPSGFAILPDGPGINGGSINDVGSGGSLLTVAFQILVDSAPTAKLSLGSVATVNSLIKCTVERIKVAVIRENA 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00065 722 Gene3D - 311 465 IPR023393 -
Spst2g00065 722 SMART HOX_1 55 117 IPR001356 GO:0003677
Spst2g00065 722 FunFam Homeobox-leucine zipper protein HDG1 44 129 - -
Spst2g00065 722 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 53 717 IPR042160 -
Spst2g00065 722 Pfam Homeodomain 56 111 IPR001356 GO:0003677
Spst2g00065 722 Gene3D - 43 129 - -
Spst2g00065 722 CDD homeodomain 56 114 IPR001356 GO:0003677
Spst2g00065 722 FunFam Homeobox-leucine zipper protein GLABRA 2 243 462 - -
Spst2g00065 722 ProSiteProfiles START domain profile. 234 466 IPR002913 GO:0008289
Spst2g00065 722 ProSiteProfiles 'Homeobox' domain profile. 53 113 IPR001356 GO:0003677
Spst2g00065 722 MobiDBLite consensus disorder prediction 21 36 - -
Spst2g00065 722 MobiDBLite consensus disorder prediction 1 63 - -
Spst2g00065 722 CDD START_ArGLABRA2_like 238 462 - -
Spst2g00065 722 Coils Coil 107 142 - -
Spst2g00065 722 Pfam START domain 244 463 IPR002913 GO:0008289
Spst2g00065 722 SMART START_1 243 463 IPR002913 GO:0008289
Spst2g00065 722 SUPERFAMILY Homeodomain-like 39 113 IPR009057 -
Spst2g00065 722 SUPERFAMILY Bet v1-like 235 465 - -
Spst2g00065 722 SUPERFAMILY Bet v1-like 484 713 - -
Spst2g00065 722 Coils Coil 161 181 - -
Spst2g00065 722 ProSitePatterns 'Homeobox' domain signature. 88 111 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00065 Spst-Chr2 553106 556524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00065 1 717 Homeobox Transcription Factor Family AT4G04890 78.155 0.0 1165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Spst2g00065 START 6.2e-53 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00065 K09338 - gmx:100815499 1353.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g00065 2 553106 556524 Spst2g00065 2 553106 556524 ECH
Spst10g01173 10 12503588 12508644 Spst2g00065 2 553106 556524 ECH
Spst5g00969 5 9294958 9296865 Spst2g00065 2 553106 556524 ECH
Spst2g00065 2 553106 556524 Spst10g01173 10 12503588 12508644 PCT