Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00031 ATGGGGCACTCTAATGTATGGAACTCTCATCCTAAGAACTACGGACCTGGTTCTCGCACCTGCCGCGTGTGTGGGAACCCTCATGGATTGATTAGGAAGTATGGGCTTATGTGTTGCAGGCAGTGCTTCCGTAGCAATGCCAAGGAAATTGGCTTCATTAAGAAGGAAGAATCTGGTATCACATCTCTCCACGTATTGCGACATAGTGTCAACTCAAATCTACAATGTGGTGGGTTTAGAACAACTGTGGAGGGGGACAAAAATCCAGTTACAGATAATGTTGTCTGGTTAAATAACAGTTTAGAACTCAGACTCATCACCACGATCTCAAACAGCCAGCCGAGACTCTCTTATACTGAAATTAAAGGCGTCCAAAGAAATAAGCAAATGGAGCCTACTGAGGAGATTTCCCAAGAATGGATGAGTTGTCTAAGTGAAGAAGTGTACACAGCCGAGGAAGCTGACTTCATGAACCAGCTTCTTGGTAACTGCTCAATCCCAGAACACTTGTATGAACGTTTCAACACGGAAACAAAATCTGCATTTTGGCCTGCCTGCGACATTCCAAATGAAAATTCTGTCTTGTTTTTACAAGGGAGTGGGTCCTGTGCTCGTAGTACCCAATATATCTTTCCCACAACAAATGCTGGAAACTGCTCTGACAATTTTGGTCACGTGTCCATTGGTTTTTCCTTACATGGGAATGACGCCAAATTGATAAATGAAAATACAGTCCAAGAGTTGGGTCTTGGCACAGGGAGAGAGAATCTTACTGACATGGATTTGCAGGCTCACAAGGCTCGTGAAATATTAGTTTCGGAACCAGAAAAGGATAATACCAGAAGCCTATTAGAAAAAAGGAGTAGGAGCTCATTTGAGGCGCAAGAGAACAAGAGGAATGTGAAATCTAAGAAGAATCCAAAACCGGCTTCTTTAAGGAAAACTGAAGGGGAAGCAAGTCCTGACCCTCAGAGTCAGACCTTAAGCAGTTGCTGTTCAGACGATGACTCCAAAGATTCTAGAGCGCTCAAGTTAAGTGGAAAATCAAGATCTAATAGAGACCCTGCAACTGATCCACAGAGCGCGTATGCAAGAAAAAGAAGAGAAAGAATAAATGAAAGGTTGAGAATTCTACAAAACCTTGTCCCCAATGGAACTAAGGTGGATATCAGCACCATGCTTGAGGAAGCTGTGCAATATGTGAAGTTTTTACAGGTTCAAATTAAGTTCGACAAGTTACAATCTAGCGCTTGGAACAACGTGTCTGTTAAAGCAGAAATCCTAGAATCTAGAGAAATGGCACCACACTCTGCCCTCCAAGTTCACACAGAGTGA 1335 0.43 MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKKEESGITSLHVLRHSVNSNLQCGGFRTTVEGDKNPVTDNVVWLNNSLELRLITTISNSQPRLSYTEIKGVQRNKQMEPTEEISQEWMSCLSEEVYTAEEADFMNQLLGNCSIPEHLYERFNTETKSAFWPACDIPNENSVLFLQGSGSCARSTQYIFPTTNAGNCSDNFGHVSIGFSLHGNDAKLINENTVQELGLGTGRENLTDMDLQAHKAREILVSEPEKDNTRSLLEKRSRSSFEAQENKRNVKSKKNPKPASLRKTEGEASPDPQSQTLSSCCSDDDSKDSRALKLSGKSRSNRDPATDPQSAYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVQYVKFLQVQIKFDKLQSSAWNNVSVKAEILESREMAPHSALQVHTE 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00031 444 SMART finulus 361 410 IPR011598 GO:0046983
Spst2g00031 444 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 354 416 IPR036638 GO:0046983
Spst2g00031 444 Gene3D 30s Ribosomal Protein S14; Chain N 1 56 IPR043140 -
Spst2g00031 444 FunFam 40S ribosomal protein S29 1 56 - -
Spst2g00031 444 PANTHER 40S RIBOSOMAL PROTEIN S29 1 55 IPR039744 GO:0003735|GO:0008270
Spst2g00031 444 FunFam Basic helix-loop-helix transcription factor 356 415 - -
Spst2g00031 444 MobiDBLite consensus disorder prediction 318 333 - -
Spst2g00031 444 Pfam Helix-loop-helix DNA-binding domain 365 405 IPR011598 GO:0046983
Spst2g00031 444 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 355 404 IPR011598 GO:0046983
Spst2g00031 444 CDD bHLH_AtIND_like 356 409 - -
Spst2g00031 444 Gene3D - 358 414 IPR036638 GO:0046983
Spst2g00031 444 MobiDBLite consensus disorder prediction 334 348 - -
Spst2g00031 444 Pfam Ribosomal protein S14p/S29e 7 54 IPR001209 GO:0003735|GO:0005840|GO:0006412
Spst2g00031 444 Hamap 30S ribosomal protein S14 type Z [rpsZ]. 2 57 IPR023676 GO:0003723|GO:0003735|GO:0006412|GO:0015935
Spst2g00031 444 MobiDBLite consensus disorder prediction 270 367 - -
Spst2g00031 444 MobiDBLite consensus disorder prediction 270 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00031 Spst-Chr2 327284 332978 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00031 135 410 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 36.858 2.00e-35 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst2g00031 Ribosomal_S14 1.4e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00031 - - var:108319891 400.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g00031 2 327284 332978 Spst2g00031 2 327284 332978 ECH
Spst2g00031 2 327284 332978 Spst10g01254 10 13338280 13341146 PCT