Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g00010 ATGGAGGAAGAAGAAGATGAAGTGGTTTGGTGTTCTTCTGATTCGGGCGATGACGAGGATAATATCGAAGAACGGAAATCTCAGAACGTGGATGCCCTGGTGAGGGGCAACCTCGTCGTGAAGAGACAATCGTTGCTACCCCGACTTCTATCAGTATCGCAAGGGGCGGCTGTTTGTAGAAAACCCTTTAAACCTCCATCCTGCAAATCTCATGCTTCCACTTACAATCAAGACCTTACTCGTAGGCTTTCCGCTCGCAAAAGGTTTGTTCCCTGGGGTTCTTCCTCTCCTATTCCTAGACCCGCGTTCCCCGACTCCAAATTCATTGCACCAGTAATTGAGAATGTTGATGTTCCTGTTTCTGAGGAGCTGAAACCATCTTTGCCCCCCGGTATCGACCCTCTAGTACTTTGGCACCCTCGAGACTCCCAGGATGATCCTTCTAATGCTAATTTCACCACCATAACTGTCGACCCTTTGCTTGTTCGTTACCTTCGTCCCCATCAGAGAGAAGGGGTTCAGTTCATGTTTGATTGTGTCTCAGGGCTGTCTAGCACACCAAATATACATGGATGCATTTTGGCAGATGATATGGGGTACCTTCTTTCTTTGAAATCTTGTCATGGTTACGGGTTTGATGGCAGTCCATTGGTTCGAAAGTCCATCATAGTGACTCCTACCAGCCTTGTCAGCAATTGGGAAGCTGAAATCAAAAAGTGGGTTGGCGAAAGAGTTCGTCTTGTTGCTCTGTGTGAAAGCACAAGAGAAGATGTTGTCTCTGGGATTGACAGTTTTACAAGTCCCCAAAGCAATTTACAGGTGCTCATTGTTTCATATGAAACATTCCGACTGCATTCTTCAAAGTTTAGCTCTAGTGACTCATGTGACCTGCTCATATGTGACGAGGCTCACAGATTGAAAAATGATCAGACAATAACAAATCGGGCATTGGCAGCTCTCCCCTGCAAACGTAGAATTTTATTGTCTGGAACTCCCTTACAAAATGATTTAGAAGAATTCTTTGCAATGGTTAATTTTACCAATCCTGGAATATTGGGCGGTATTGCACATTTTCGACGTTACTATGAGGCACCTATTATTTGTGGAAGAGAACCTGCTGCCACTGCAGAAGAGAAGAAATTAGGTGCTGAACGCTCTGCTGAATTAAGTATCAATGTTAATCAGTTCATATTAAGAAGGACTAATGCATTGTTATCAAATCACTTGCCACCAAAGGTTAAGCGAGCAATTACTGAAGAACTGAAGCAATCAAAGATTTTGGCCTACATAACAGCTCTTAAAAAGTTGTGCAATCATCCTAAGCTTATTTATGATACCATACGAAGTGGAAGCCCAGGGACTTCGGGTTTTGAGGACTGTATCCGATTCTTCCCACATGAAATGTTATCTGGAAGGTCTGGCACCTGGACCGGAGGGCATGGAGCATGGGTTGAACTATCCGGGAAAATGCATGTCTTGGCAAGATTACTTGCTCATTTACGTCATAGAACAAATGACCGCATTGTCCTGGTCTCAAACTACACTCAGACTCTTGATCTTTTTGCTCAATTGTGTCGGGAACGAAGGTACCCTCATTTGAGGCTTGATGGCTCCACATCAATTAGTAAAAGGCAGAAGTTGGTCAACTGCTTTAATGATACATCAAAGGATGAATTTGTTTTTCTCTTAAGCAGCAAGGCTGGTGGTTGTGGTCTCAATTTGATTGGTGGAAATCGACTTGTCTTGTTTGATCCTGATTGGAATCCAGCAAATGATAAACAAGCTGCAGCAAGAGTATGGAGGGATGGACAGAAGAAAAGAGTTTACATTTATAGATTTTTGAGTGCTGGAACAATAGAAGAAAAGGTTTACCAGCGTCAGATGTCAAAAGAAGGGCTGCAAAAGGTCATTCAGCAGGAGCAAACTGATAGCCTTGTGGCACAGGGTAACTTTCTTTCAACCGAGGATCTTCGTGATTTGTTTACATTTCATGAGAACATCAAGTCAGATATTCATGAAAAGATGCAATGTAATCGGTGTCAAACACACGGTGGCCCTCGAAGCACTGACGCCCAATTAACATCAGATAGTGAACCTGGTGAAGAAACCTCTGATATAGGTGGATTTGCAGAAATTGCTGGCTGCTTACAGAATTTAAAAAGATCAGAAAAGCAGGTAGGGAGCCCATTGGAAGAAGATTTAGGAAGTTGGGGCCATCATTTTTTCCCAATTTCTGTGCCAGATGCTATCCTTCAGGCTTCAGCAGGTGATGAGGTGACTTTTGTCTTCACAAACCAAGTCAATGGAAAATTGGTACCCATCGAGTCTATCATCAGTTCAAAGCTACAGCAAAAGGAACCAAATAAGGAATTACTCAAATCAAAGCCCACTCCTTTATATAACAGATTACCCCTGCAGTCTGCTTCTGGTGTTGCTAGTGTGTCGTCATCATCCACTCCCAATACCAACATCACCACAAATGTGGCATTTGATACTGACTACTCTCTTGTTAGTAAAGTATTACCACAGAAAAGATCATGTCCTGCTAATATCAATAATTTTGAGTAA 2568 0.4283 MEEEEDEVVWCSSDSGDDEDNIEERKSQNVDALVRGNLVVKRQSLLPRLLSVSQGAAVCRKPFKPPSCKSHASTYNQDLTRRLSARKRFVPWGSSSPIPRPAFPDSKFIAPVIENVDVPVSEELKPSLPPGIDPLVLWHPRDSQDDPSNANFTTITVDPLLVRYLRPHQREGVQFMFDCVSGLSSTPNIHGCILADDMGYLLSLKSCHGYGFDGSPLVRKSIIVTPTSLVSNWEAEIKKWVGERVRLVALCESTREDVVSGIDSFTSPQSNLQVLIVSYETFRLHSSKFSSSDSCDLLICDEAHRLKNDQTITNRALAALPCKRRILLSGTPLQNDLEEFFAMVNFTNPGILGGIAHFRRYYEAPIICGREPAATAEEKKLGAERSAELSINVNQFILRRTNALLSNHLPPKVKRAITEELKQSKILAYITALKKLCNHPKLIYDTIRSGSPGTSGFEDCIRFFPHEMLSGRSGTWTGGHGAWVELSGKMHVLARLLAHLRHRTNDRIVLVSNYTQTLDLFAQLCRERRYPHLRLDGSTSISKRQKLVNCFNDTSKDEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSAGTIEEKVYQRQMSKEGLQKVIQQEQTDSLVAQGNFLSTEDLRDLFTFHENIKSDIHEKMQCNRCQTHGGPRSTDAQLTSDSEPGEETSDIGGFAEIAGCLQNLKRSEKQVGSPLEEDLGSWGHHFFPISVPDAILQASAGDEVTFVFTNQVNGKLVPIESIISSKLQQKEPNKELLKSKPTPLYNRLPLQSASGVASVSSSSTPNTNITTNVAFDTDYSLVSKVLPQKRSCPANINNFE 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g00010 855 PANTHER SNF2/RAD54 FAMILY MEMBER 52 778 - -
Spst2g00010 855 CDD DEXHc_RAD54 165 400 - -
Spst2g00010 855 Gene3D - 472 683 IPR027417 -
Spst2g00010 855 SMART helicmild6 519 603 IPR001650 -
Spst2g00010 855 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 400 IPR027417 -
Spst2g00010 855 FunFam DNA repair and recombination protein RAD54-like 480 650 - -
Spst2g00010 855 Pfam SNF2-related domain 168 434 IPR000330 GO:0005524|GO:0140658
Spst2g00010 855 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 492 653 IPR001650 -
Spst2g00010 855 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 183 350 IPR014001 -
Spst2g00010 855 Gene3D - 414 666 - -
Spst2g00010 855 Pfam Helicase conserved C-terminal domain 494 602 IPR001650 -
Spst2g00010 855 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 410 765 IPR027417 -
Spst2g00010 855 MobiDBLite consensus disorder prediction 681 701 - -
Spst2g00010 855 FunFam DNA repair and recombination protein RAD54 134 399 - -
Spst2g00010 855 CDD SF2_C_SNF 486 614 - -
Spst2g00010 855 MobiDBLite consensus disorder prediction 680 704 - -
Spst2g00010 855 SMART ultradead3 161 358 IPR014001 -
Spst2g00010 855 Gene3D - 139 399 IPR038718 -
Spst2g00010 855 MobiDBLite consensus disorder prediction 1 18 - -
Spst2g00010 855 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g00010 Spst-Chr2 176300 188946 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g00010 483 661 RAD5 or RAD16-like Gene Family AT5G43530 36.111 1.15e-23 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Spst2g00010 SNF2_N 2.1e-34 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g00010 K10875 - gmx:100781631 1437.55