Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03729 ATGGAAATTCAATTCCAAAAACCAAACCTGCAGCATCAGAAATCAGGCATTGCATTCACAAAAGGAGGAAAGTTGAAAGGGAGAAGCAAAAGCAACAACACCAACAAATTTGTTGGGGTGAGACAAAGGCCTTCAGGGAGATGGGTGGCTGAGATCAAAGACACAACTCAGAAGATAAGAATGTGGCTTGGCACATTTGAGACTGCTGAGGAAGCAGCCAGAGCCTATGATGAAGCTGCATGCCTTCTTCGTGGATCCAACACTCGCACCAACTTCATCACTCATGTGTCCTTGGATTCCCCTCTTGCTTCTCGAATTAGAAATCTTCTTAACAACAAAAAAGGTATAAAAAAACAGGAAGATGCTAATGCTAATAATGCAGAAGTTCAAGTAGTTAGCAGCACTAGTACTAGTATTACTACTTGTACTAATAGTGATTCAGGCAATGACAATGACAACAATGACAAGTCTCTTTCTACTGTGACACCTCAAAGTTCAAATCTCTTTGATGATGCTTATAAACCAGATTTGAGCAATTGCAGGGAGGACTTTGGGTTAGGTCATCAATCCAATACTTCATGGGGTTTTGGACCTGTCTTTGATCGTTTTCCAGTTGCTCAAATATTGGATATACCAAAGATTGATGATTGCCTCACTGATACAGCAGCTGACTTGGAGCTTTCGGAATTTGAAAGAATGAAAGTTGAAAGACAAATTTCAGCTTCACTCTATGCAATTAATGGGGTACAAGAGTACATGGAAACTGTTCAGGACTGCA 778 0.4049 MEIQFQKPNLQHQKSGIAFTKGGKLKGRSKSNNTNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFITHVSLDSPLASRIRNLLNNKKGIKKQEDANANNAEVQVVSSTSTSITTCTNSDSGNDNDNNDKSLSTVTPQSSNLFDDAYKPDLSNCREDFGLGHQSNTSWGFGPVFDRFPVAQILDIPKIDDCLTDTAADLELSEFERMKVERQISASLYAINGVQEYMETVQDC 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03729 259 ProSiteProfiles AP2/ERF domain profile. 36 93 IPR001471 GO:0003700|GO:0006355
Spst1g03729 259 MobiDBLite consensus disorder prediction 123 166 - -
Spst1g03729 259 Gene3D AP2/ERF domain 35 94 IPR036955 GO:0003700|GO:0006355
Spst1g03729 259 SUPERFAMILY DNA-binding domain 36 93 IPR016177 GO:0003677
Spst1g03729 259 MobiDBLite consensus disorder prediction 121 166 - -
Spst1g03729 259 MobiDBLite consensus disorder prediction 16 36 - -
Spst1g03729 259 FunFam ethylene-responsive transcription factor RAP2-11 35 94 - -
Spst1g03729 259 Pfam AP2 domain 36 85 IPR001471 GO:0003700|GO:0006355
Spst1g03729 259 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 29 240 - -
Spst1g03729 259 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Spst1g03729 259 PRINTS Ethylene responsive element binding protein signature 59 75 IPR001471 GO:0003700|GO:0006355
Spst1g03729 259 SMART rav1_2 36 99 IPR001471 GO:0003700|GO:0006355
Spst1g03729 259 CDD AP2 36 92 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03729 Spst-Chr1 47126277 47127054 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03729 10 256 AP2-EREBP Transcription Factor Family AT5G19790 43.825 1.69e-46 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst1g03729 AP2 5.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03729 K09286 - gmx:100796898 413.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03729 1 47126277 47127054 Spst1g03729 1 47126277 47127054 ECH
Spst1g03729 1 47126277 47127054 Spst4g00730 4 30950166 30951176 PCT