Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03718 ATGCCAGAGTTGAGAAGTGGAGCTAGAAGGTCGAAACGGCTTGGAGATCTTCAGCCTGGTCCATTACCTGTTGAGCAAGGAGAGAATTGGGCACAACCTGCTCAGAATCGAACTAGGAGGAGAGTTGGAGGTGGAAGAGGAAGAGGTGGTAATGCCACAGCTGTAGGCAAAGGGCCTTCACCAGCTGTACCCACAAGGAGAACTGCAGCTGGTAGAGGCCGTGGAGCAAGATTGATTGATCTGGACCCTGAACCTTGTGAAGTGTTGCCAGAACCTGTTGCTTTAGGGGTTCCGGAACCAGTTTACAATCACGTAGAAGTAGTGGCCAATAATAATATTGTAATGGAGGGTGGGAGTGCAGATAAGGTGGCAGTAGCTGAGGAAGAACCCAGCACAACTCCTGTTCCCGAGAGGGTACAAGTTGGTAACTCTCCTATATATAAGATAGAAAGGAAATTGGGTAAGGGCGGTTTTGGTCAAGTTTATGTTGGCCGAAGGGTAAGTGGGGGCTCTGATCGAACAGGTCCTGATGCGGTTGAGGTTGCACTTAAGTTTGAGCACAGAAACAGTAAAGGTTGCAATTATGGGCCTCCTTATGAGTGGCAAGTTTACAGTACTCTGAATGGCTGTTATGGAATTCCCTGGGTTCATTACAAGGGCCGACAAGGAGATTTCTACATTTTGGTCATGGACATGCTTGGGCCCAGTCTTTGGGATGTATGGAATTCTCTTGGCCAATCAATGTCACCTAGTATGGCTGCTTGCATTGCCGTAGAGGCTATATCAATTCTTGAGAAGCTGCACTTGAAAGGGTTTGTGCATGGTGACGTGAAACCAGAGAACTTTCTACTCGGGCAGCCTGGATCTGCTGACGATAAGAAACTATATCTTATTGATCTTGGTCTGGCTTCTAGATGGAAGGATGCATCATCTGGTCAACATGTTGATTATGACCAGAGACCTGATATATTCAGGGGAACAATAAGGTATGCTAGTGTACATGCACATTTGGGCAGAACTGGAAGTCGAAGGGATGATCTTGAGTCTCTGGCATACACTCTAATATTTCTCATAAAAGGGAGATTACCTTGGCAGGGTTATCAGGGTGACAATAAAAGCTTTCTTGTTTGTAAGAAAAAGATGGCCACTTCCCCGGAGTTGATGTGTTGCTTTTGTCCTGCTCCATTTAAGCAGTTTCTTGAAGCTGTTACTAATATGAGATTTGATGAGGAGCCAAATTATTCCAAGCTTATATCATTTTTTGAAAGCTTGATTGAACCGTGCACTCCATTGAGACCTATCAGAATAGATGGAGCTTTAAAGGTTGGTCAAAAACGAGGTAGGATGCTTATAAATCTGGAAGAAGATGAGCAACCTAAGAAGAAAGTGCGATTGGGGAGTCCTGCTACTCAATGGATATCAGTGTATAATGCACGCCGTCCTATGAAACAGAGATATCACTATAATGTTGCAGACACTAGGCTCAGGCAACATGTCGACAAGGGTATTGAGGATGGGTTGTATATAAGCTGTGTGGCCTCTGCAGCAAATTTGTGGGCTCTAATCATGGATGCAGGAACTGGTTATTCTTCACAAGTTTATGAGTTATCTTTGGCCTTCCTGCACAAGGATTGGATAATGGATCAATGGGAAAAAAATTACTACATCAGTTCAATCGCTGGTGCGGTTAATGGGAGTTCCTTGGTTGTCATGTCCAAAGGAACTCCTTTCACGCAGCAGTCCTACAAAGTGAGTGAATCGTTTCCTTTCAAATGGATAAACAAGAAGTGGAAAGAAGGATTCCATGTTACCTCAATGACTACTGCTGGCAGTCGCTGGGGTGTTGTTATGTCCAGGAATTCTGGGTATTCTGATCAGGTTGTCGAGATTGACTTTTTGTATCCAAGTGAAGGAATCCATCGTCGATGGGAGAATGGTTACCGGATTACTTCTATGGCTGCGACTAGTGATCAGGCAGCCTTCATACTGAGCATACCAAAACGCAAATTGCTTGATGAAACTCAGGAGACACTTCGTACATCTGCTTTTCCTAGTACCCATGTTAAGGAAAAATGGGCCAAAAATCTCTACATTGCCTCTATATGTTATGGGCGAACTGTTTGCTAG 2127 0.4448 MPELRSGARRSKRLGDLQPGPLPVEQGENWAQPAQNRTRRRVGGGRGRGGNATAVGKGPSPAVPTRRTAAGRGRGARLIDLDPEPCEVLPEPVALGVPEPVYNHVEVVANNNIVMEGGSADKVAVAEEEPSTTPVPERVQVGNSPIYKIERKLGKGGFGQVYVGRRVSGGSDRTGPDAVEVALKFEHRNSKGCNYGPPYEWQVYSTLNGCYGIPWVHYKGRQGDFYILVMDMLGPSLWDVWNSLGQSMSPSMAACIAVEAISILEKLHLKGFVHGDVKPENFLLGQPGSADDKKLYLIDLGLASRWKDASSGQHVDYDQRPDIFRGTIRYASVHAHLGRTGSRRDDLESLAYTLIFLIKGRLPWQGYQGDNKSFLVCKKKMATSPELMCCFCPAPFKQFLEAVTNMRFDEEPNYSKLISFFESLIEPCTPLRPIRIDGALKVGQKRGRMLINLEEDEQPKKKVRLGSPATQWISVYNARRPMKQRYHYNVADTRLRQHVDKGIEDGLYISCVASAANLWALIMDAGTGYSSQVYELSLAFLHKDWIMDQWEKNYYISSIAGAVNGSSLVVMSKGTPFTQQSYKVSESFPFKWINKKWKEGFHVTSMTTAGSRWGVVMSRNSGYSDQVVEIDFLYPSEGIHRRWENGYRITSMAATSDQAAFILSIPKRKLLDETQETLRTSAFPSTHVKEKWAKNLYIASICYGRTVC 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03718 708 ProSitePatterns Protein kinases ATP-binding region signature. 153 184 IPR017441 GO:0005524
Spst1g03718 708 SMART serkin_6 147 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g03718 708 SUPERFAMILY Protein kinase-like (PK-like) 147 435 IPR011009 -
Spst1g03718 708 FunFam Casein kinase 1-like protein 119 467 - -
Spst1g03718 708 ProSiteProfiles Protein kinase domain profile. 147 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g03718 708 PANTHER CASEIN KINASE-RELATED 147 672 - -
Spst1g03718 708 Pfam Protein kinase domain 147 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g03718 708 CDD STKc_CK1 147 421 - -
Spst1g03718 708 ProSitePatterns Serine/Threonine protein kinases active-site signature. 272 284 IPR008271 GO:0004672|GO:0006468
Spst1g03718 708 Gene3D Transferase(Phosphotransferase) domain 1 115 464 - -
Spst1g03718 708 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03718 Spst-Chr1 46987607 46992975 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03718 127 327 EF-hand Containing Proteins AT4G04700 25.962 4.37e-08 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Spst1g03718 Pkinase 7.6e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03718 - - gmx:100801967 1379.39