Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03706 ATGGAAGAAGAGTTCGATATTCCCGGTGGCGAGGAAATGGATCTCGGCGAAGACAAGGTTGGCGAGGAGAGGGAGATCGGCTCCGACGGCCTCAAGAAGAAGCTCCTCAAGGAAGGTCAAGGCTGGGAAACCCCCGAAGTAGGCGACGAAGTTCAAGTTCATTACACCGGGACTTTGCTCGATGGAACGAAGTTCGATTCAAGCCGCGACAGGGGTTCTCCTTTCAGCTTCACGCTCGGACAAGGGCAAGTAATTAAAGGATGGGATGAAGGTATCAAAACAATGAAGAAAGGTGAAAATGCTATTTTCACCATCCCTCCTGAGCTAGCATATGGTGAATCTGGTTCCCCTCCAACAATTCCTCCTAATGCTACACTCCAATTTGATGTTGAGCTACTTTCATGGAGTAGTGTAAAGGACATATGCAAGGATGGTGGTATATACAAGAAGATACTTATCGAGGGAGATAAATGGGAGAACCCTAAGGATCCTGATGAAGTATTGGTTAAATATGAAGCTCATCTGGAAAATGGAAAGCTTGTAGGAAAGTCTGATGGAGTGGAGTTCACAGTCAGAGAGGGTCATTATTGTCCTGCATTGTCAAAGGCCATTAAAACCATGAAGAAAGGAGAAAAAGTGGTTTTGACAGTTAAGCCACAATATGGATTTGGTGAAAAGGGAAAGCCAGCACAGGGTGATGAAGTTGCTGTTCCACCAAATGCAACATTGCAGATTACTCTTGAATTAGTTTCTTGGAAAACTGTTTCAGAAGTAACTAATGATAAGGTCATAAAGAAAATTATCAAGGAAGGGGAAGGATATGAGCGTCCAAATGAGGGGGCCAGTGTGAAAGTGAAACTAATTGGAAAGCTTCAAGATGGTACTACCTTTTTGAGAAAGGGCCATGATGAAGAAGAGAAGCTGTTTGAATTCAAAACAGATGAGGAACAAGTTGTTGATGGACTTGATAGAGCTGTATTGACTATGAAGAAGGGTGAGGTTGCATTGTTGACCATTGCACCTGAGTATGCTTTTGGTCCATCAGAGTCTCAGCAGGAGTTGGCTGTGATTCCTCCAAACTCAATTGTGTATTTTGAAGTTGAGCTTGTGTCATTTGAGAAAGAGAAAGAGTCCTGGGATCTGAACAATGAAGAGAAACTTGAAGCTGCTGCTAAGAAGAAAGAAGAAGGAAATGTGTTGTTTAAAGCTGGTAAATATGCAAGAGCTTCCAAAAGATATGAAAAGGCTGTGAAGTACGTAGAATATGATACCTCCTTTGGAGAGGAGGAGAAAAAGATGGCAAAGACCTTGAAGGTTGCCTGTAATCTGAACAATGCTGCTTGCAAGTTGAAGTTAAAAGACTATAAAGAAGCAGAAAAATTGTGTACCAAGGTGTTAGACCTTGAGAGTACAAACGTGAAAGCCCTTTATAGAAGGGCCCAAGCATATATGCAGCTGAGTGACTTGGATTTGGCTGAACTTGACATTAAAAAGGCTCTTGAAATTGACCCTAACAACAGAGATCTCAAATTGGAGTACAAGACTCTGAAGGCAAAGGTGAAAGAGAATAATAGAAAGGAGGCGAAATTTTATGGAAATATAATCACTAAGTTGACAAAGATTGGTTCCTGA 1632 0.4191 MEEEFDIPGGEEMDLGEDKVGEEREIGSDGLKKKLLKEGQGWETPEVGDEVQVHYTGTLLDGTKFDSSRDRGSPFSFTLGQGQVIKGWDEGIKTMKKGENAIFTIPPELAYGESGSPPTIPPNATLQFDVELLSWSSVKDICKDGGIYKKILIEGDKWENPKDPDEVLVKYEAHLENGKLVGKSDGVEFTVREGHYCPALSKAIKTMKKGEKVVLTVKPQYGFGEKGKPAQGDEVAVPPNATLQITLELVSWKTVSEVTNDKVIKKIIKEGEGYERPNEGASVKVKLIGKLQDGTTFLRKGHDEEEKLFEFKTDEEQVVDGLDRAVLTMKKGEVALLTIAPEYAFGPSESQQELAVIPPNSIVYFEVELVSFEKEKESWDLNNEEKLEAAAKKKEEGNVLFKAGKYARASKRYEKAVKYVEYDTSFGEEEKKMAKTLKVACNLNNAACKLKLKDYKEAEKLCTKVLDLESTNVKALYRRAQAYMQLSDLDLAELDIKKALEIDPNNRDLKLEYKTLKAKVKENNRKEAKFYGNIITKLTKIGS 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03706 543 Gene3D - 24 138 IPR046357 GO:0003755
Spst1g03706 543 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 164 253 IPR001179 GO:0003755
Spst1g03706 543 SMART tpr_5 390 423 IPR019734 GO:0005515
Spst1g03706 543 SMART tpr_5 473 506 IPR019734 GO:0005515
Spst1g03706 543 SMART tpr_5 439 472 IPR019734 GO:0005515
Spst1g03706 543 MobiDBLite consensus disorder prediction 1 32 - -
Spst1g03706 543 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 48 136 IPR001179 GO:0003755
Spst1g03706 543 MobiDBLite consensus disorder prediction 12 32 - -
Spst1g03706 543 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 274 370 IPR001179 GO:0003755
Spst1g03706 543 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 43 133 IPR001179 GO:0003755
Spst1g03706 543 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 159 250 IPR001179 GO:0003755
Spst1g03706 543 Coils Coil 506 526 - -
Spst1g03706 543 FunFam Peptidylprolyl isomerase 254 375 - -
Spst1g03706 543 SUPERFAMILY FKBP-like 21 147 - -
Spst1g03706 543 Gene3D Tetratricopeptide repeat domain 380 533 IPR011990 GO:0005515
Spst1g03706 543 FunFam Peptidylprolyl isomerase 378 533 - -
Spst1g03706 543 Gene3D - 139 253 IPR046357 GO:0003755
Spst1g03706 543 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 280 373 IPR001179 GO:0003755
Spst1g03706 543 FunFam Peptidylprolyl isomerase 140 253 - -
Spst1g03706 543 SUPERFAMILY FKBP-like 258 392 - -
Spst1g03706 543 SUPERFAMILY FKBP-like 140 256 - -
Spst1g03706 543 Pfam Tetratricopeptide repeat 473 506 IPR001440 GO:0005515
Spst1g03706 543 Gene3D - 254 379 IPR046357 GO:0003755
Spst1g03706 543 ProSiteProfiles TPR repeat profile. 473 506 IPR019734 GO:0005515
Spst1g03706 543 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 145 256 - -
Spst1g03706 543 FunFam Peptidylprolyl isomerase 21 139 - -
Spst1g03706 543 SUPERFAMILY TPR-like 381 536 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03706 Spst-Chr1 46873892 46877997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03706 19 541 Calmodulin-binding Proteins AT3G25230 80.725 0.0 857
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03706 K09571 - gmx:100812632 988.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03706 1 46873892 46877997 Spst4g01543 4 54438628 54442197 PCT