Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03702 ATGGAAAACCAATTCTTTCTCAATGTTGGTGTGCCCCCTCAGCTGCATTTTGAGCCTTCACCACCTCCTTGTCCAGCCTCTTGGCAGTCCATGTCTTCTTCTGCCATGGATGTTCAGGTGGCAGTTTTGAATAGTTCAACTGAGCAGACACAGGATTGCTTTTATACACCGGCATGGGACAAATCAACAGATTATGTTGTTCAGTTTGATTCTGCACTGAGTTCAATGGTATCTTCTCCAGCAGCTTCCAATTCCAACATGTCAAGTGAGAATTTTGTCATCAGGGAGTTGATTGGGAAATTGGTAAACATTGGTGGTGGTGGTGGCTCTGATGAGATCTCACCTCATTCTCAGCCTTTGGTTGGTCCATCTTCCTACATCAATGACAATAACAGCACCAACACTTCATGTTACAGCACCCCTTTGAGTTCTCCTCCAAAGGTGAACATGAACAAGATCCCCACAATGGTGAACCACTTGGTGAAAGAGAGCATGCCCCCCAGTTTGGGAACATCAATCTCCTTGAATTCCAGTGTGGCAGAATTCTCAGCTGATCCTGGCTTTGCTGAGAGGGCTGCAAAGTTTTCTTGCTTTGGAAGTAGGAGTTTCAATGGCAGGACCACCCAATTGGGCCCTAATAACAATGCTGAGTTGACTCACAGATCTTCTCCATTGGTGGAAAATGGGAAGCTCCCTAGAGTCTCAAGTAGTCCATCTCTCAAAGTGCTTGGATCTCAAATAGGCGCCCAGGAGAACAAGAATTCTCCATTGCAAGATCTAATGGAAGTGGCCAATTCTCAAGAGGAATCAACAATCTCTGAACAAATTCCAAATGGGGACACGGGGGTGAAACCTTCCCCTTATGCGAATTCTAGAAAAAGAAAAGGTCCATCCAAAGGAAAAGCCAAGGAAACTTCAACCCCTACCAACCCCCCTACGGCTGCTGAAGCTAGCGAAGACTCAAATGTAAAGCGCAGGAAGCCTAATGAAGGTGAGGGGAATAAAAATGGCCAAGTGAAGGCAGAGGAAGAGTCCAAAGGGATAAGTTGTAGTGCAAATGATGACAAACAGAATAAGAGCAACTCAAAACCTCCAGAGCCTCCAAAGGATTACATTCATGTTAGAGCAAGAAGAGGTCAAGCCACTGACAGTCATAGTCTTGCAGAAAGAGTCCGGAGGGAGAAAATCAGTGAAAGAATGAAGCTTCTCCAAGATCTTGTCCCAGGTTGCAATAAGGTCACAGGTAAAGCACTTATGCTTGATGAAATTATAAACTATGTACAGTCATTGCAGCGCCAAGTTGAGCTTCTGTCCATGAAGTTGGCTTCCGTTAACACCAGGCTGGATTTTAGTATTGAGAGTCTAATCTCAAAAGATATATTTCAATCAAATAATTCCTTGGCACACCCAATATTCCCATTAGATTCCTCAGCACCAGCCTTTTATGGGCAACACCCTCAGCCAAACCCAGCAATCCACAGTAACATTCCTAATGGAACTGTGTCCCACACCTCAGGGGACCCATTAGATACTGGTTTGTGCCAAAACATTGGCATGCAGTTACCTCACCTAAATGGCTTTAATGAAGGTGCCTCTCAGTATCCAATAACATTCTCTGAAGAGGACCTCCACACCATTGTTCAGATGGGATTTGGCCAAACTGCAAACAGGAAAACACCAATACAATCTCAAAGTTTCAATGGCTCAAATCAAGTACCCCTATGA 1725 0.4458 MENQFFLNVGVPPQLHFEPSPPPCPASWQSMSSSAMDVQVAVLNSSTEQTQDCFYTPAWDKSTDYVVQFDSALSSMVSSPAASNSNMSSENFVIRELIGKLVNIGGGGGSDEISPHSQPLVGPSSYINDNNSTNTSCYSTPLSSPPKVNMNKIPTMVNHLVKESMPPSLGTSISLNSSVAEFSADPGFAERAAKFSCFGSRSFNGRTTQLGPNNNAELTHRSSPLVENGKLPRVSSSPSLKVLGSQIGAQENKNSPLQDLMEVANSQEESTISEQIPNGDTGVKPSPYANSRKRKGPSKGKAKETSTPTNPPTAAEASEDSNVKRRKPNEGEGNKNGQVKAEEESKGISCSANDDKQNKSNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVELLSMKLASVNTRLDFSIESLISKDIFQSNNSLAHPIFPLDSSAPAFYGQHPQPNPAIHSNIPNGTVSHTSGDPLDTGLCQNIGMQLPHLNGFNEGASQYPITFSEEDLHTIVQMGFGQTANRKTPIQSQSFNGSNQVPL 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03702 574 Pfam Helix-loop-helix DNA-binding domain 384 431 IPR011598 GO:0046983
Spst1g03702 574 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 380 430 IPR011598 GO:0046983
Spst1g03702 574 SMART finulus 386 436 IPR011598 GO:0046983
Spst1g03702 574 MobiDBLite consensus disorder prediction 319 350 - -
Spst1g03702 574 MobiDBLite consensus disorder prediction 488 509 - -
Spst1g03702 574 Coils Coil 427 447 - -
Spst1g03702 574 MobiDBLite consensus disorder prediction 555 574 - -
Spst1g03702 574 MobiDBLite consensus disorder prediction 302 317 - -
Spst1g03702 574 MobiDBLite consensus disorder prediction 204 222 - -
Spst1g03702 574 MobiDBLite consensus disorder prediction 264 371 - -
Spst1g03702 574 FunFam Basic helix-loop-helix transcription factor 377 449 - -
Spst1g03702 574 MobiDBLite consensus disorder prediction 264 280 - -
Spst1g03702 574 Gene3D - 377 452 IPR036638 GO:0046983
Spst1g03702 574 MobiDBLite consensus disorder prediction 482 509 - -
Spst1g03702 574 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 378 449 IPR036638 GO:0046983
Spst1g03702 574 CDD bHLH_AtBPE_like 370 455 - -
Spst1g03702 574 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 275 486 IPR024097 GO:0006355
Spst1g03702 574 MobiDBLite consensus disorder prediction 204 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03702 Spst-Chr1 46825987 46828391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03702 1 540 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 42.336 6.68e-110 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst1g03702 HLH 4.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03702 - - gmx:100787699 940.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03702 1 46825987 46828391 Spst4g01548 4 54504807 54507510 PCT