Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03688 ATGGATGGCAACAACTACTTCAAGAATCATCGTTTTGGAGATGCCATTGACGCTTACAGTGAGGTGTCGCTTTGTTTTGCAATTGCACTGTGCCCTGATGTTTCGGTGTATTGGACCAACCGTGCTCTCTGTCATCTTAAGCTCAATGATTGGAGCAGAGTAGAGGAAGACTCTCGTCAAGCCATCAAGCTTGACAACAATTTGGTTAAGGCCCACTATATGTTAGGTCTTGCATCGGTGCACAGACAAGAGTTTGCTAAAGGAATCTTAGAATTGAAGAAGGCTTTGGATCTTGATAGAGGTCCCCATTCTAAGGGCCAAATGGTGGAGGAAATATGGCAAGAGCTTGCTAAAGCACGATACCTAGAGTGGGAACATTCATATACTAAGCGATCATGGGAACTGCAGAGCTTGAAAGAAGCTTGTGGGTATGCTCTAAAGGAAAAACATTTTCTTGAAGCCCCCCACATGAAGGGATTCGTAGAAGATGGTACTACCCATTTAGAACAGTTAGAAGCTTTAGGAAGAGTGTTTGATGAAGTTGCAGAATATGACATGCCTACTGAGGTGCCAGATTATCTATGCTGTAGAATCACACTTGATATTTTTTGTGATCCTGTCATCACCCCAAGTGGACTTACATATGAGAGGACAGTGATTCTTGACCATCTTGAGAAGGTGGGTAAGTTTGATCCAGTCACTCGAGGTCCACTTGAGCCATCACAGTTAATACCAAACCTAGCCATAAAGCAAGCAGTTGAGGCATTCCTGGATAAACATGGGTGGGCATATAAAGATATATTAACAAAAGGCTTTTAG 819 0.4286 MDGNNYFKNHRFGDAIDAYSEVSLCFAIALCPDVSVYWTNRALCHLKLNDWSRVEEDSRQAIKLDNNLVKAHYMLGLASVHRQEFAKGILELKKALDLDRGPHSKGQMVEEIWQELAKARYLEWEHSYTKRSWELQSLKEACGYALKEKHFLEAPHMKGFVEDGTTHLEQLEALGRVFDEVAEYDMPTEVPDYLCCRITLDIFCDPVITPSGLTYERTVILDHLEKVGKFDPVTRGPLEPSQLIPNLAIKQAVEAFLDKHGWAYKDILTKGF 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03688 272 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 2 265 IPR045200 GO:0000209|GO:0061630
Spst1g03688 272 SUPERFAMILY TPR-like 3 102 IPR011990 GO:0005515
Spst1g03688 272 SMART tpr_5 69 102 IPR019734 GO:0005515
Spst1g03688 272 SMART tpr_5 35 68 IPR019734 GO:0005515
Spst1g03688 272 CDD RING-Ubox_CHIP 190 260 IPR045202 -
Spst1g03688 272 SUPERFAMILY RING/U-box 185 266 - -
Spst1g03688 272 Gene3D Tetratricopeptide repeat domain 1 131 IPR011990 GO:0005515
Spst1g03688 272 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 266 IPR013083 -
Spst1g03688 272 SMART Ubox_2 193 256 IPR003613 GO:0004842|GO:0016567
Spst1g03688 272 ProSiteProfiles U-box domain profile. 189 263 IPR003613 GO:0004842|GO:0016567
Spst1g03688 272 Pfam U-box domain 190 262 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03688 Spst-Chr1 46600394 46608480 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03688 2 265 U-box Gene Family AT3G07370 60.000 5.04e-115 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03688 K09561 - gmx:100796519 402.519
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03688 1 46600394 46608480 Spst4g01579 4 55115824 55120672 PCT