Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03686 ATGGATGGCAACAACTACTTCAAGAATCATCGTTTTGGAGATGCCATTGACGCTTACAGTGAGGTGTCGCTTTGTTTTGCAATTGCACTGTGCCCTGATGTTTCGGTGTATTGGACCAACCGTGCTCTCTGTCATCTTAAGCTCAAGTTAAAGGTTCCTAGTTTTAAGCTCTCATTCCTCTTCCTTGATAACCTCCTTGTCCTCCTCATACTTATCAATGGTATCCTCCTTGTCTCCAACCTTGATTAA 249 0.4297 MDGNNYFKNHRFGDAIDAYSEVSLCFAIALCPDVSVYWTNRALCHLKLKLKVPSFKLSFLFLDNLLVLLILINGILLVSNLD 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03686 82 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 2 49 IPR045200 GO:0000209|GO:0061630
Spst1g03686 82 SUPERFAMILY TPR-like 2 49 IPR011990 GO:0005515
Spst1g03686 82 Gene3D Tetratricopeptide repeat domain 1 53 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03686 Spst-Chr1 46586017 46587318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03686 2 49 U-box Gene Family AT3G07370 66.667 2.94e-16 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03686 K09561 - ini:109173654 72.4034