Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03683 ATGGCTGTTCCCTTGCTAAGCAAGAAAGTTGTGAAGAAGCGTGTGAAGAAGTTTAAGAGGCCTCAAAGTGACCGCAAAATTTCCGTGAAGCCTAGCTGGCGCAGGCCGAAGGGTATTGATTCACGTGTCAGGAGAAAGTTCAAAGGATGTGTTTTGATGCCAAACATTGGTTATGGTTCAGACAAGAAGACCCGTCACTATCTGCCTAATGGATTCAAGAAGTTTGTTGTCCACAATGTCAAGGATCTAGAACTTCTGATGATGCACAACAGAACATACTGTGCTGAGATAGCACACAATGTGTCAACCAGGAAAAGAAAGGAGATTGTGGAACGTGCTGCACAGTTGGATGTTGTTGTTACCAACAAACTGGCCAGGTTGCGCAGCCAAGAAGATGAGTGA 402 0.4502 MAVPLLSKKVVKKRVKKFKRPQSDRKISVKPSWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVKDLELLMMHNRTYCAEIAHNVSTRKRKEIVERAAQLDVVVTNKLARLRSQEDE 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03683 133 PANTHER 60S RIBOSOMAL PROTEIN L32 AND DNA-DIRECTED RNA POLYMERASE II, SUBUNIT N 1 133 IPR001515 GO:0003735|GO:0005840|GO:0006412
Spst1g03683 133 Pfam Ribosomal protein L32 16 122 IPR001515 GO:0003735|GO:0005840|GO:0006412
Spst1g03683 133 SUPERFAMILY Ribosomal protein L32e 2 131 IPR036351 -
Spst1g03683 133 CDD Ribosomal_L32_L32e 22 122 IPR001515 GO:0003735|GO:0005840|GO:0006412
Spst1g03683 133 SMART Ribosomal_L32e_2 15 122 IPR001515 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03683 Spst-Chr1 46557321 46558321 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03683 1 133 Cytoplasmic Ribosomal Protein Gene Family AT4G18100 87.218 1.00e-85 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03683 K02912 - nnu:104586297 251.521