Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03643 ATGGTTGATCTGCAACAAGACAATGCAGATGATCAAACTTCCAGAGTAGCTAAGCGTGCCCAACAAGAAGAAGAAGATAATGAAGGCCCTTCTAGAGTAAATAAGAATAAGGGCAAGGTCTCAAAGCGTGTCAGGTCACGAGCATCATCTCCTCCATGTGCAGCATGCAAGAAAATGAGAAGAAGATGCAGTAATGACTGCATCTTTGCCCCTTATTTTGGTTCTAGCCAGGGCTCAGAACGGTTTGCAGCAGTGCACAAGGTGTTTGGTGCAAACAATTTGTCAAAACTGTTGTCAGAAGTTGAAGTGGTTCATCGGAATGAGGCGATGAATTCCATGTGCTACGAGGCTCAAGCAAGGCTTGCTAATCCTGTTTATGGCTGTGTCTCCACCATTTCTGCTTTGCAACAACAGGTGGCGTCGTTGCAAGGAGAGCTTGCTATGGTGCATAATCAGCTGATTAATACAAAAATATTATATGAAAATCTTCTTCAGAGAACACAACAGTACCAACAGCAACCAAACATCAACGTAGCTATGCAACCTGCACAGTCCAACAATTTACCTGCTGCTTCCACCAACAACCTGATGAACATGAGCTTCTTCAACCCTGGTTTTGATCACCTTGCAATGCAGATACCTCCCTCAACACACAACATGGAGCCTCTTCAGTTCTCTGGGCCTCCCCAGGATTTCAACAATGACCAACCTTATCTTTTTCCATGA 726 0.4435 MVDLQQDNADDQTSRVAKRAQQEEEDNEGPSRVNKNKGKVSKRVRSRASSPPCAACKKMRRRCSNDCIFAPYFGSSQGSERFAAVHKVFGANNLSKLLSEVEVVHRNEAMNSMCYEAQARLANPVYGCVSTISALQQQVASLQGELAMVHNQLINTKILYENLLQRTQQYQQQPNINVAMQPAQSNNLPAASTNNLMNMSFFNPGFDHLAMQIPPSTHNMEPLQFSGPPQDFNNDQPYLFP 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03643 241 Pfam Lateral organ boundaries (LOB) domain 52 150 IPR004883 -
Spst1g03643 241 MobiDBLite consensus disorder prediction 222 241 - -
Spst1g03643 241 ProSiteProfiles LOB domain profile. 51 153 IPR004883 -
Spst1g03643 241 MobiDBLite consensus disorder prediction 12 35 - -
Spst1g03643 241 Coils Coil 132 152 - -
Spst1g03643 241 PANTHER LOB DOMAIN CONTAINING PROTEIN 50 194 - -
Spst1g03643 241 MobiDBLite consensus disorder prediction 1 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03643 Spst-Chr1 46020075 46021827 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03643 52 162 AS2 family AT3G03760 63.964 4.77e-48 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Spst1g03643 LOB 3.6e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03643 - - pvu:PHAVU_001G115200g 325.479